PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vradi04g07270.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 218aa MW: 23631.6 Da PI: 9.0806 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45 | 2.5e-14 | 4 | 48 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + ++ G+g+W+ I+r k+Rt+ q+ s+ qky Vradi04g07270.1 4 PWTEEEHKLFLVGLQKVGKGDWRGISRNYVKTRTPTQVASHAQKY 48 7*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 2.5E-8 | 1 | 51 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 16.261 | 1 | 53 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 3.2E-16 | 3 | 51 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 3.88E-16 | 3 | 53 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.86E-10 | 4 | 49 | No hit | No description |
Pfam | PF00249 | 1.4E-11 | 4 | 48 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-10 | 4 | 48 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 218 aa Download sequence Send to blast |
MGIPWTEEEH KLFLVGLQKV GKGDWRGISR NYVKTRTPTQ VASHAQKYFL RRTNLNRRRR 60 RSSLFDITTD SVSTTPMEEG QIQYQDNLSL VHPVYPVTAE GSNMNGFSKL PMYSNDIGTG 120 VMSAQAGNPM KILTLGQGNV EQNGPSTKLV CTTAPIVPDY IGSTASDITA TSLSSLDPPT 180 LSLGLSLSSS QRQTSSIHSA FHSLSCFNNG DSFITVA* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269|PubMed:21030505}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vradi04g07270.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269|PubMed:21030505}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 0.0 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_014498254.1 | 1e-161 | transcription factor MYB1R1 isoform X2 | ||||
Swissprot | Q2V9B0 | 8e-43 | MY1R1_SOLTU; Transcription factor MYB1R1 | ||||
TrEMBL | A0A1S3TWU1 | 1e-159 | A0A1S3TWU1_VIGRR; transcription factor MYB1R1 isoform X2 | ||||
STRING | XP_007138137.1 | 1e-117 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4248 | 31 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G74840.2 | 2e-32 | MYB_related family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|