PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi04g05010.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NAC
Protein Properties Length: 204aa    MW: 22977.4 Da    PI: 9.4771
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi04g05010.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM921e-28141391128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekew..yfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      lp+G+ F+Ptde l  +yL+k++ +++l+  + i++ ++++++PwdLp   k    +w  +fF   +++  +g+  +  + +g W+   kd+ev
  Vradi04g05010.1  14 LPVGYLFDPTDEILAGYYLRKRIMAQTLPN-DLIQDYHVFQTQPWDLPGGGKY--MNWqkFFFYDVRSRV-SGNPDKSDAGKGQWEMVEKDEEV 103
                      799*************************99.99***************43322..334335555554444.46666667899************ PP

              NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        ++++++g k +Lvf+k++ ++  kt+Wvmhe+rl
  Vradi04g05010.1 104 ELSDEKVIGKKSVLVFWKAKGSSLAKTKWVMHEFRL 139
                      **********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.1E-3211158IPR003441NAC domain
PROSITE profilePS5100535.36814159IPR003441NAC domain
PfamPF023659.7E-1615139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MEVLVPLGGK TYKLPVGYLF DPTDEILAGY YLRKRIMAQT LPNDLIQDYH VFQTQPWDLP  60
GGGKYMNWQK FFFYDVRSRV SGNPDKSDAG KGQWEMVEKD EEVELSDEKV IGKKSVLVFW  120
KAKGSSLAKT KWVMHEFRLA LKSNPSKMSA LAVCRIFERK TSKRATKKAR VSNRSNIEEA  180
MDVIDFTVEC GGTETGPPSP GTP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-171416215171Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi04g05010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-116AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014497474.11e-151NAC domain-containing protein 83
TrEMBLA0A1S3TUP71e-150A0A1S3TUP7_VIGRR; NAC domain-containing protein 83
STRINGXP_007161703.11e-102(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF134131127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.11e-24NAC domain containing protein 28