PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi04g04670.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family B3
Protein Properties Length: 264aa    MW: 30229.6 Da    PI: 9.7569
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi04g04670.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.82.3e-1927112598
                      -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      l  s++l++g l lp kf++++g+    + t+ l+ ++  +Wevkl  +k++g++++++GWkeF++ + L  g  +vF+++g+s f  +v +++
  Vradi04g04670.1  27 L--SNNLQHGKLKLPAKFVSKYGNH--LPSTMFLKLPNDAEWEVKL--EKSDGSVWFQQGWKEFAEYHSLAHGHLLVFTYNGTSHF--HVLICD 112
                      4..89999**************966..7889***************..*********************************99999..999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.92E-2417114IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.5E-2517115IPR015300DNA-binding pseudobarrel domain
CDDcd100171.03E-1821112No hitNo description
PROSITE profilePS5086313.59221114IPR003340B3 DNA binding domain
SMARTSM010192.5E-1822114IPR003340B3 DNA binding domain
PfamPF023622.6E-1626112IPR003340B3 DNA binding domain
SuperFamilySSF1019361.02E-5197245IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.5E-5202252IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508637.218203257IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MTSTLNQGDD SHGGTASKPI HFFRIILSNN LQHGKLKLPA KFVSKYGNHL PSTMFLKLPN  60
DAEWEVKLEK SDGSVWFQQG WKEFAEYHSL AHGHLLVFTY NGTSHFHVLI CDMSCMEIDY  120
PVNKANHKRV RIKSENIQPP KTMKTTENKK RCCSNLQDTA SDEKVRDHKG MLKNLNEGKR  180
NMEALENTSF MLIMKPTIFT NGTWRVKLVR YPNYSAYLTN LSDFARDNNL KEGDAWFFKL  240
MNMGDDVVMK VSFVARNSSL RGQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi04g04670.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027927585.11e-158B3 domain-containing protein At4g01580-like
TrEMBLA0A0L9U6691e-168A0A0L9U669_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RVR71e-168A0A0S3RVR7_PHAAN; Uncharacterized protein
STRINGGLYMA08G44640.11e-101(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.11e-24B3 family protein