PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi04g04620.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 194aa    MW: 21524.9 Da    PI: 5.2634
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi04g04620.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.96.6e-153451156
              AP2 11 krgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                      +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+++++g+
  Vradi04g04620.1  3 AWGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAALAIKGH 45
                     6**********843...6***********************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103219.928152IPR001471AP2/ERF domain
SMARTSM003802.4E-28158IPR001471AP2/ERF domain
CDDcd000181.38E-27154No hitNo description
Gene3DG3DSA:3.30.730.102.0E-26153IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-18253IPR016177DNA-binding domain
PfamPF008479.9E-10345IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MRAWGKWVSE IREPRKKSRI WLGTYPTAEM AARAHDVAAL AIKGHSAYLN FPNLAQDLPR  60
PITTSPKDIQ AAAAKAATTF FDDGKHCEAE KDEKNHAEQA SSSTLCMENI EAEQVQAEEA  120
SPSTLSMDTT QGSSTSHSTA DDDTLFDLPD LFPDGNNGLF YSYSSSWRLF TGFGRYYWNP  180
PFVQHVWLIC KPT*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00312DAPTransfer from AT2G44940Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi04g04620.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022635875.11e-120ethylene-responsive transcription factor ERF034-like
SwissprotQ8LBQ78e-49ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A3Q0EVU31e-119A0A3Q0EVU3_VIGRR; ethylene-responsive transcription factor ERF034-like
STRINGXP_007140776.12e-99(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.16e-41ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]