PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi04g04400.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 346aa    MW: 39098.7 Da    PI: 7.2429
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi04g04400.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.85.8e-19168210145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + +W+ eEd++l++a+k+lG++ W+ Iar+m+ gRt++ +k++w+
  Vradi04g04400.1 168 KESWSVEEDKILIEAHKELGNK-WAEIARRMP-GRTENTIKNHWN 210
                      578*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.997163217IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.1E-18165215IPR009057Homeodomain-like
SuperFamilySSF466892.73E-15167219IPR009057Homeodomain-like
SMARTSM007179.1E-17167215IPR001005SANT/Myb domain
PfamPF002499.1E-17168210IPR001005SANT/Myb domain
CDDcd001671.41E-13170213No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MEFSPSFPEK IHYLSGMFPE IKSEIPVSEE NSSFMYQNNF NHFQQHHPLN ESNHGHPESL  60
FTEGSSSIIT PLFSLSSAAP SSGGSSSYKS TYPNESLKGG YANPYYPMAY APNNTNAQSI  120
HGHPNKVIWD FSQKAPLHSG PSATSDPQRP CPIGQTLRDQ KMVAHRQKES WSVEEDKILI  180
EAHKELGNKW AEIARRMPGR TENTIKNHWN ATKRRQKAKR QRNKRRSSKG SPTLLESYIR  240
KVTAAEESEK ELKNSMSKMN LNDTTKTGLF RVRYESSEGD FSSEEEELGW TLQHHVACGG  300
DGGYVPVMVN AGEENAMDYE VAMQMVPEVQ MRKEMDLMEM IYRKG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1idy_A2e-17167216453MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3
1idz_A2e-17167216453MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1212225KRRQKAKRQRNKRR
2216221KAKRQR
3219224RQRNKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi04g04400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017417924.10.0PREDICTED: myb-like protein Q isoform X2
TrEMBLA0A0L9U6800.0A0A0L9U680_PHAAN; Uncharacterized protein
STRINGXP_007140966.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15703196
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.12e-18myb domain protein 98