PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi04g04290.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 294aa    MW: 33941 Da    PI: 8.4349
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi04g04290.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.000241437223
                     EETTTTEEESSHHHHHHHHHH..T CS
          zf-C2H2  2 kCpdCgksFsrksnLkrHirt..H 23
                     kC  C + F+  ++L+ H+r   H
  Vradi04g04290.1 14 KCAACFRQFNKLEHLVEHMRIsyH 37
                     6999****************8666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.8871342IPR007087Zinc finger, C2H2
PROSITE patternPS0002801537IPR007087Zinc finger, C2H2
SuperFamilySSF530981.04E-10122239IPR012337Ribonuclease H-like domain
Gene3DG3DSA:3.30.420.101.2E-17133245IPR012337Ribonuclease H-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MDCRIESTET HRNKCAACFR QFNKLEHLVE HMRISYHSVH EPTCGICRKH CRSFESLREH  60
LIGPLPKQEC RDIFAYRGCK FCLKGIIGRF SNLGLRDNLA ISGGARGPQV VALACKMVGG  120
GSDGSLDLCG RVPEYLRDAM PMRQVQRRIQ DFLCNGEPMW TIRARGGRAR ILVGHGLDHD  180
LECLQIEYRT EKIRDTAKYP PLMKTSKLSN SLKYDIQVGI QDPYDDCVAT MRLYMRMRSQ  240
VHRTQDYPLV SDPQNRNNFA SWRQSDLERM TPEQMLEISR SDYYCWCLDS FYP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi04g04290.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-114AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014497587.10.0apoptosis-enhancing nuclease-like
TrEMBLA0A1S3TV050.0A0A1S3TV05_VIGRR; apoptosis-enhancing nuclease-like
STRINGXP_007140956.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF257434