PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi04g03640.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | bZIP | ||||||||
Protein Properties | Length: 399aa MW: 43855.1 Da PI: 6.9705 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 32.5 | 1.9e-10 | 184 | 218 | 4 | 38 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeL 38 k rr+++NReAAr+sR+RKka++++Le +L Vradi04g03640.1 184 AKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKL 218 6889*************************865555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.1E-7 | 181 | 246 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.243 | 183 | 227 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.6E-7 | 184 | 220 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14708 | 2.17E-22 | 185 | 235 | No hit | No description |
SuperFamily | SSF57959 | 9.64E-7 | 185 | 228 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 4.3E-7 | 186 | 229 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 188 | 203 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 1.7E-27 | 267 | 340 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 399 aa Download sequence Send to blast |
MASHRIGELG LSESGPSSHH IPYGVLHGIN TTPVSNLINQ GSAFDFGELE EAIVLHGVKS 60 RNDDDKASLF TARPAATLEM FPSWPMRFQQ TPRGGSKSGG ESTDSGLSSK TEPPFEAESP 120 MSKKASSSDH QAFDQQHLQH RQQLQQDMAS DAARTASSQN QSAAKSQQEK RKGAGSTSEK 180 PLDAKTLRRL AQNREAARKS RLRKKAYVQQ LESSRLKLTQ IEQELQRARS QGLFVDCGGV 240 GSNVSSAGAA MFDMEYGRWL EEDHRLMGEL RNGLQVPLSD SDMRVMVDGY LSHYDEIFRL 300 KGVAAKSDVF HLINGMWTSQ AERCFLWIGG FRPSDLITIM GMYGLRHSSQ QAEEALSQGL 360 EQLQQSLVDT IAGGPVVDGV QQMVVAMSKL ANLEGFVRQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269|PubMed:20805327, ECO:0000269|PubMed:27717447}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi04g03640.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by flg22 in leaves. {ECO:0000269|PubMed:27717447}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 1e-152 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014496978.1 | 0.0 | transcription factor TGA9 isoform X1 | ||||
Swissprot | Q93XM6 | 1e-149 | TGA9_ARATH; Transcription factor TGA9 | ||||
TrEMBL | A0A1S3TT67 | 0.0 | A0A1S3TT67_VIGRR; transcription factor TGA9 isoform X1 | ||||
STRING | XP_007150072.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4555 | 33 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08320.3 | 1e-124 | bZIP family protein |
Publications ? help Back to Top | |||
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