PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi04g03600.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 283aa    MW: 32424.4 Da    PI: 8.7395
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi04g03600.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2171.7e-05138157120
                      EEETTTTEEESSHHHHHHHH CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                      + C++C+k+F+r  n++ H+
  Vradi04g03600.1 138 FACSICSKTFNRYNNMQMHM 157
                      78*****************9 PP
2zf-C2H214.50.0001222244123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      + C +C+ksF  k + ++H +++
  Vradi04g03600.1 222 FMCRKCSKSFAVKGDWRTHEKNC 244
                      89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.6E-6107161No hitNo description
PROSITE profilePS5015710.45138165IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.1E-5138157IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.17138160IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280140160IPR007087Zinc finger, C2H2
SMARTSM00355190185217IPR015880Zinc finger, C2H2-like
SuperFamilySSF576676.96E-6208242No hitNo description
Gene3DG3DSA:3.30.160.603.9E-5208242IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035556222242IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MSFRECNVEN QNLCLQTPTF IEWLKPSSSV ISSISSPPSS LARHDQLSQE TIQFLPFEED  60
HEKDGLEVKE EKLEQVTVAL HIGLPHTVDP ETDNHEKKII HVKEEEPLKK SFQGCSFNQE  120
RRFWIPTPAQ ILVGPMQFAC SICSKTFNRY NNMQMHMWGH GSEFRKGPDS LRGTQPAAML  180
RLPCYCCAQG CKNNINHPRA KPLKDFRTLQ THYKRKHGAK PFMCRKCSKS FAVKGDWRTH  240
EKNCGKLCNK KFSKSLRDIR ERFATEHLQG VMVCICISLL CG*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi04g03600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014497480.11e-174zinc finger protein WIP3
SwissprotQ9SGD11e-91ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLA0A1S3TUQ41e-172A0A1S3TUQ4_VIGRR; zinc finger protein WIP3
STRINGXP_007150080.11e-161(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.17e-87WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]