PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi04g03480.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 217aa    MW: 24008.8 Da    PI: 5.1338
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi04g03480.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.64.2e-154797155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     + y+GVr++    rWv+e+r+p++   + r++lg++  +e+Aa+a++ a+++l+g
  Vradi04g03480.1 47 PVYRGVRQRN-GDRWVCEVREPNT---KSRIWLGTYSAPEMAARAHDVAALALKG 97
                     68*****999.9******999833...5************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.3E-114797IPR001471AP2/ERF domain
PROSITE profilePS5103220.70548105IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-2848107IPR001471AP2/ERF domain
SMARTSM003801.2E-2548111IPR001471AP2/ERF domain
SuperFamilySSF541715.56E-1948107IPR016177DNA-binding domain
PRINTSPR003671.3E-64960IPR001471AP2/ERF domain
CDDcd000188.13E-2749107No hitNo description
PRINTSPR003671.3E-67187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MDVTMINNDD YSFSSSPSST SSPSDNSSFR SHKRKAGRRK FRETRHPVYR GVRQRNGDRW  60
VCEVREPNTK SRIWLGTYSA PEMAARAHDV AALALKGTSA AFNFPDSVSL LPVAKSSSAA  120
DIRAAAAQVS ELFLPTNPSS SSFTRVEIET NPCSVEGVVD FAKESKESVF FDEEAIYNMP  180
GLLDSMAEGL LITPPSMKRF DWDEVDCETD LTLWTY*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:17136305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi04g03480.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By calcium ion, methyl-jasmonate (MeJA), cold, drought, and high salinity stress. {ECO:0000269|PubMed:17136305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014496716.11e-156dehydration-responsive element-binding protein 1F-like
SwissprotA2WZI42e-56DRE1F_ORYSI; Dehydration-responsive element-binding protein 1F
SwissprotQ8S9Z52e-56DRE1F_ORYSJ; Dehydration-responsive element-binding protein 1F
TrEMBLA0A1S3TSF31e-155A0A1S3TSF3_VIGRR; dehydration-responsive element-binding protein 1F-like
STRINGXP_007150096.11e-110(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25490.13e-40C-repeat/DRE binding factor 1
Publications ? help Back to Top
  1. Wang Q, et al.
    Overexpression of a rice OsDREB1F gene increases salt, drought, and low temperature tolerance in both Arabidopsis and rice.
    Plant Mol. Biol., 2008. 67(6): p. 589-602
    [PMID:18470484]
  2. Liu HH,Wang YG,Wang SP,Li HJ
    Cloning and characterization of peanut allene oxide cyclase gene involved in salt-stressed responses.
    Genet. Mol. Res., 2015. 14(1): p. 2331-40
    [PMID:25867379]