PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vradi04g03450.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 264aa MW: 29760.8 Da PI: 9.251 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.3 | 5.7e-16 | 64 | 112 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr++k g+Wv+e+r+p++ ++r++lg++ t+e+Aa+a++ +++++g Vradi04g03450.1 64 IYRGVRQRK--GKWVCELREPKK---TTRIWLGTYPTPEMAARAHDVGALAIRG 112 69***9987..*********853...5********************9999987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.4E-11 | 63 | 112 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.42E-29 | 63 | 122 | No hit | No description |
SuperFamily | SSF54171 | 5.3E-18 | 64 | 122 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.3E-27 | 64 | 122 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.2E-29 | 64 | 126 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.178 | 64 | 120 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.1E-5 | 65 | 76 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.1E-5 | 86 | 102 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 264 aa Download sequence Send to blast |
MNFEIEYPFS FQSSSAIFQS SSPTPPNNNN NPNLLSHPLV HAQFVVSPKR KGGRKKFKET 60 RHPIYRGVRQ RKGKWVCELR EPKKTTRIWL GTYPTPEMAA RAHDVGALAI RGTSAILNFP 120 NSASFLPILN SSSPKDIRAA AAEAAESFRP ISLSSLSNSR NKKTGRKTNC RRVCKKVSPM 180 EEKTPETVLD TSLNNNMHNL DREKCDVINN CDLSSTVFFD EEALFNMPGL LDRMAESLCL 240 FPLPSVDYWD DHAYFTDFNL WTD* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-13 | 51 | 121 | 3 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vradi04g03450.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_014496715.1 | 0.0 | dehydration-responsive element-binding protein 1F-like | ||||
TrEMBL | A0A1S3TSG6 | 0.0 | A0A1S3TSG6_VIGRR; dehydration-responsive element-binding protein 1F-like | ||||
STRING | XP_007150099.1 | 1e-127 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF18261 | 6 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G25490.1 | 3e-45 | C-repeat/DRE binding factor 1 |