PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi04g03190.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 403aa    MW: 44819.6 Da    PI: 7.5895
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi04g03190.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H223.11.9e-07237259123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      + C++Cgk F+r  nL+ H+r H
  Vradi04g03190.1 237 HYCQICGKGFKRDANLRMHMRAH 259
                      68*******************99 PP

2zf-C2H210.70.0016329352123
                      EEETTTT.EEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                      y+C+ C+ k Fs  s+L++H + +
  Vradi04g03190.1 329 YVCKRCNqKQFSVLSDLRTHEKHC 352
                      9*******************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.35E-6235262No hitNo description
PROSITE profilePS5015712.632237264IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.6E-7237295IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0028237259IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280239259IPR007087Zinc finger, C2H2
SMARTSM00355140291324IPR015880Zinc finger, C2H2-like
SMARTSM0035523329351IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MISRVTSSFQ NHQGLEMFPE HEDLVSPSVE SGSVSHSSTL LFNLSILKDK VSEVQTLVGV  60
ILSPNQTLPE STSMAISSMN STIQEILVTA SSMMFACQQM ALTTPPGTTN NNTTTCTHKL  120
HQPNKLLPHS NFPTNTSLLG NIAIDISDHH QGCLFSSTES EALDWFSESY NNNKDDNSNS  180
NISKTKEDDP GVVIGENKMI ISRGGAPREE HELNEEGYSH SDIIELDAAD LLAKYTHYCQ  240
ICGKGFKRDA NLRMHMRAHG DEYKTNAALS NPIKNKGKLE EVLMGVKAKR YSCPEEGCRW  300
NQKHAKFQPL KSMICAKNHY KRSHCPKMYV CKRCNQKQFS VLSDLRTHEK HCGDLKWQCS  360
CGTSFSRKDK LMGHVSLFLG HQPATNNVAL SSYSGKLDHH TL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi04g03190.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014497513.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLA0A1S3TUQ80.0A0A1S3TUQ8_VIGRR; protein SENSITIVE TO PROTON RHIZOTOXICITY 2
STRINGXP_007150139.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80993045
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.12e-92C2H2 family protein