PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi04g03190.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C2H2 | ||||||||
Protein Properties | Length: 403aa MW: 44819.6 Da PI: 7.5895 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 23.1 | 1.9e-07 | 237 | 259 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++Cgk F+r nL+ H+r H Vradi04g03190.1 237 HYCQICGKGFKRDANLRMHMRAH 259 68*******************99 PP | |||||||
2 | zf-C2H2 | 10.7 | 0.0016 | 329 | 352 | 1 | 23 |
EEETTTT.EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg.ksFsrksnLkrHirtH 23 y+C+ C+ k Fs s+L++H + + Vradi04g03190.1 329 YVCKRCNqKQFSVLSDLRTHEKHC 352 9*******************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.35E-6 | 235 | 262 | No hit | No description |
PROSITE profile | PS50157 | 12.632 | 237 | 264 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 4.6E-7 | 237 | 295 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0028 | 237 | 259 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 239 | 259 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 140 | 291 | 324 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 23 | 329 | 351 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 403 aa Download sequence Send to blast |
MISRVTSSFQ NHQGLEMFPE HEDLVSPSVE SGSVSHSSTL LFNLSILKDK VSEVQTLVGV 60 ILSPNQTLPE STSMAISSMN STIQEILVTA SSMMFACQQM ALTTPPGTTN NNTTTCTHKL 120 HQPNKLLPHS NFPTNTSLLG NIAIDISDHH QGCLFSSTES EALDWFSESY NNNKDDNSNS 180 NISKTKEDDP GVVIGENKMI ISRGGAPREE HELNEEGYSH SDIIELDAAD LLAKYTHYCQ 240 ICGKGFKRDA NLRMHMRAHG DEYKTNAALS NPIKNKGKLE EVLMGVKAKR YSCPEEGCRW 300 NQKHAKFQPL KSMICAKNHY KRSHCPKMYV CKRCNQKQFS VLSDLRTHEK HCGDLKWQCS 360 CGTSFSRKDK LMGHVSLFLG HQPATNNVAL SSYSGKLDHH TL* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00522 | DAP | Transfer from AT5G22890 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi04g03190.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014497513.1 | 0.0 | protein SENSITIVE TO PROTON RHIZOTOXICITY 2 | ||||
TrEMBL | A0A1S3TUQ8 | 0.0 | A0A1S3TUQ8_VIGRR; protein SENSITIVE TO PROTON RHIZOTOXICITY 2 | ||||
STRING | XP_007150139.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8099 | 30 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22890.1 | 2e-92 | C2H2 family protein |