PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi04g03180.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C2H2 | ||||||||
Protein Properties | Length: 252aa MW: 27169.8 Da PI: 8.3064 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.2 | 0.00054 | 121 | 143 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H Vradi04g03180.1 121 YECKTCNRTFPSFQALGGHRASH 143 99**********99999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.71E-5 | 120 | 147 | No hit | No description |
Pfam | PF13912 | 2.1E-13 | 120 | 145 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.305 | 121 | 148 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 123 | 143 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MLSEISDMEG MAMEELVSCN NDPTNIAKGK RTKRRLRPLS PCVVNAVTAT AAAMTSSCSS 60 ASGGGGGSFS SITLEEEEED MANCLILLAQ GRGGSDPLHH KDLCDDVKTE KGGSKIEFYV 120 YECKTCNRTF PSFQALGGHR ASHKKPKVEE KKSPPPSSSP QLFNFEETKV NHMKISPSVS 180 LQLGCGNNRG GLNFHGNKSK IHECSICGSA HTKVDAPKKD TGESETTKKR LIRSFQSRPD 240 NGIMRCPCPF L* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi04g03180.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014497090.1 | 1e-120 | zinc finger protein 1 | ||||
TrEMBL | A0A1S3TTL5 | 1e-119 | A0A1S3TTL5_VIGRR; zinc finger protein 1 | ||||
STRING | XP_007150141.1 | 1e-103 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF586 | 34 | 141 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28200.1 | 4e-20 | C2H2 family protein |