PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi04g02970.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family TALE
Protein Properties Length: 704aa    MW: 77917.3 Da    PI: 7.3328
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi04g02970.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.93.4e-085125432354
                      SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  23 rypsaeereeLAkklgLterqVkvWFqNrRak 54 
                       yp+ +++  LA+++gL+ +qV++WF N R +
  Vradi04g02970.1 512 CYPTDTDKHMLASQTGLSRNQVSNWFINARVR 543
                      59****************************87 PP
2BELL100.21.6e-32369437472
             BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      + q+kkakLl ++eeV ++ kqy+ q+q+vissFe vagl+sa+pY+s+Alk +S+hFrcLk+ i++q+
  Vradi04g02970.1 369 DYQQKKAKLLYMQEEVTRQCKQYHLQMQMVISSFESVAGLNSATPYVSMALKSVSKHFRCLKNSISDQL 437
                      789***************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005746.3E-40271435IPR006563POX domain
PfamPF075262.4E-38276434IPR006563POX domain
CDDcd000863.85E-9495548No hitNo description
SMARTSM003892.4E-5495551IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.2E-17509551IPR009057Homeodomain-like
PfamPF059204.5E-13510543IPR008422Homeobox KN domain
SuperFamilySSF466893.25E-11511554IPR009057Homeodomain-like
PROSITE profilePS5007110.738513547IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010229Biological Processinflorescence development
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 704 aa     Download sequence    Send to blast
MSSLRPESHV AQQIRREKLR IQNSSQPLHE FPNNLEPLSL QPGFNNFDLL HVRNVRNANM  60
LDEPVVYPPE MTNFSTSLNP LSTPKNALEY HQEIGAAEAS NRLMMNQYGS FSHSMPSIHS  120
SHKEPCELRN LGNWRNSAPQ QGSDWQDMTS LMQQNDHSIW VGNGTEVELQ QPSYGNQPNP  180
LRFGWTNRAI DNITSDSIPQ SLSLSLSSNA QPKPSVSQHE QGSTSDDPRC LKYMTPSIVS  240
RDFAKSLQDT VGMPSKSTIT YRSVGPLGPF TGYATILKSS RFLKSVQQLL DEIFCVSGAK  300
FAKSYDVSER VSPEVSASTS ADTVTVNNTG VTAKGSNSGS SSTMLYNVSK ENCSDLGVGS  360
SFGLSPRPDY QQKKAKLLYM QEEVTRQCKQ YHLQMQMVIS SFESVAGLNS ATPYVSMALK  420
SVSKHFRCLK NSISDQLKLI SEALGEDVSI PSCSTGSKAD TTMARIRCSM DQSFLKNKSG  480
RGSTTDLLDP QQHVWRPQRG LPERAVAILK ACYPTDTDKH MLASQTGLSR NQVSNWFINA  540
RVRVWKPMVE EIHMLETKAT GSREKSGKHE GTSSGPEGGD NSQPRVDKPL SNIGMINSIP  600
ENRFEGMEME SSNAEERGLS EEEWSQEKRS KLECQMTSNN MDGTLMGFVP YRRGGLEVGG  660
LGSVSLTLGL RHGVEGVQHQ QQLQDEQLRH HHLGGHMIRD YVG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi04g02970.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014498299.10.0BEL1-like homeodomain protein 9
RefseqXP_014498301.10.0BEL1-like homeodomain protein 9
RefseqXP_022635427.10.0BEL1-like homeodomain protein 9
RefseqXP_022635428.10.0BEL1-like homeodomain protein 9
RefseqXP_022635429.10.0BEL1-like homeodomain protein 9
TrEMBLA0A1S3TX120.0A0A1S3TX12_VIGRR; BEL1-like homeodomain protein 9
STRINGXP_007150172.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34813257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.11e-66BEL1-like homeodomain 8