PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi04g02720.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

C2H2

Protein Properties

Length: 468aa MW: 51661.9 Da PI: 7.6622

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi04g02720.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.9	0.00067	135	157	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H + + Vradi04g02720.1 135 WKCEKCSKKYAVQSDWKAHNKIC 157 58*****************8876 PP
2	zf-C2H2	11	0.0013	165	183	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg+ Fsrk+++++H + Vradi04g02720.1 165 DCGTIFSRKDSFVTHRAFC 183 9**************8765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	2.5E-4	123	156	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence Send to blast
MYVKQPFFIS SHLYLFSNMM SGEAITVPSN LRDSSVQVHD PISNPNPTNP NPNSSVKRKR 60 SLPGTPGNDC SVAKVADGHE PVHMRSVQQG FSERPEPAAA SARAQSAVEA AAKIKGRDLT 120 GIKKHFSRKH GEKKWKCEKC SKKYAVQSDW KAHNKICGTR QYKCDCGTIF SRKDSFVTHR 180 AFCDAMVEQS GRLPAILSNL GNDILMNAQG PRLMPQGLQL HGFHSEFGGP GSESYMGNFA 240 DAEHVEHKLR LPIWLDQTNL QLNHPLGVVP GNSSVFSTGT TLPETNNMFG TSSSQAQWTN 300 YRYPEASFRS ASVSVPHGLK LEQEENKGEL SHSVSSLYPS HMESIRMGGN SPFDNSNFGL 360 LDPNMSSTST NNVVEIQKIF KEGNEGENFS LMVSSQARSN MESGFSLSCR KSLEHMVMPR 420 IEEWESGEAE IMEKQQVHSS SNTETKDFMG VGDGSVMNLQ RQFLGQY*

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence Send to blast

MYVKQPFFIS SHLYLFSNMM SGEAITVPSN LRDSSVQVHD PISNPNPTNP NPNSSVKRKR  60
SLPGTPGNDC SVAKVADGHE PVHMRSVQQG FSERPEPAAA SARAQSAVEA AAKIKGRDLT  120
GIKKHFSRKH GEKKWKCEKC SKKYAVQSDW KAHNKICGTR QYKCDCGTIF SRKDSFVTHR  180
AFCDAMVEQS GRLPAILSNL GNDILMNAQG PRLMPQGLQL HGFHSEFGGP GSESYMGNFA  240
DAEHVEHKLR LPIWLDQTNL QLNHPLGVVP GNSSVFSTGT TLPETNNMFG TSSSQAQWTN  300
YRYPEASFRS ASVSVPHGLK LEQEENKGEL SHSVSSLYPS HMESIRMGGN SPFDNSNFGL  360
LDPNMSSTST NNVVEIQKIF KEGNEGENFS LMVSSQARSN MESGFSLSCR KSLEHMVMPR  420
IEEWESGEAE IMEKQQVHSS SNTETKDFMG VGDGSVMNLQ RQFLGQY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	6e-35	131	199	3	71	Zinc finger protein JACKDAW
5b3h_F	6e-35	131	199	3	71	Zinc finger protein JACKDAW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi04g02720.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015040	0.0	AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022635412.1	0.0	protein indeterminate-domain 7 isoform X1
TrEMBL	A0A3Q0EZ46	0.0	A0A3Q0EZ46_VIGRR; protein indeterminate-domain 7 isoform X1
STRING	XP_007150215.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF181	34	275

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45260.1	3e-34	C2H2-like zinc finger protein