PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi04g02250.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 169aa    MW: 19004.1 Da    PI: 9.292
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi04g02250.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.000734163123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     +kC+ C+++Fs+   L  H  +H
  Vradi04g02250.1 41 FKCKTCSRRFSSFQALGGHRASH 63
                     89**********99999998887 PP
2zf-C2H2110.001492114123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++Cp+Cg  F     L  H+r+H
  Vradi04g02250.1  92 HPCPICGLQFAIGQALGGHMRKH 114
                      78*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.184163IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.02E-541114No hitNo description
PfamPF139121.2E-114165IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.3054168IPR007087Zinc finger, C2H2
PROSITE patternPS0002804363IPR007087Zinc finger, C2H2
SMARTSM003550.2392114IPR015880Zinc finger, C2H2-like
PfamPF139122.0E-892115IPR007087Zinc finger, C2H2
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MKRDREEGEF DNMANCLMLL TKVGESESKG RDIRDAEIGD FKCKTCSRRF SSFQALGGHR  60
ASHKKPKLMI TDLSCRHHLP CTPTTKQQPR MHPCPICGLQ FAIGQALGGH MRKHRTAIND  120
RRDSDSLSIL KKSKNGGRLN LCLDLNLMPL EDDDLKLNLR TPVLNCFI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi04g02250.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014497472.21e-121zinc finger protein ZAT12
TrEMBLA0A1S3TUP31e-120A0A1S3TUP3_VIGRR; zinc finger protein ZAT12
STRINGXP_007150296.12e-97(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.18e-30C2H2 family protein