PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi04g01980.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

GRAS

Protein Properties

Length: 620aa MW: 70378.3 Da PI: 4.9652

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi04g01980.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	359.3	5.6e-110	245	616	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 l+ lL+ cA+av+s++ + a++lL+++++++sp g+ +qRla+yf +AL+a l +++ ++y+ l++++ s ++ ++a++++ v+P+ k++ Vradi04g01980.1 245 LRALLMLCAQAVASDSPSFAKQLLKQIKQHSSPIGNDTQRLAHYFGNALEACLDGTGFQVYSVLSSKRIS---AKDMVKAYCAYASVCPFEKIT 335 5789*********************************************************9999998...899999*********** PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186 + aN+ I e++e+vH+iDf+i +G++Wp+L+ L++Rp+gpp+lRiTg+++p++g +e++ etg+rL++++++++vpfefn+ +a+++ Vradi04g01980.1 336 IIFANKSICFQSENAETVHVIDFGIRYGFKWPSLISILSKRPGGPPKLRITGIDQPQPGfrPEERVLETGRRLEHYCKRFNVPFEFNA-IARKW 428 ************************************************************************************.7 PP GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280 +++++e+L+++++E +aVn++++l++lldesv l+++r++vL+l+k+ +P+++v++ + +h+ + F+ rf eal +ysalf++le+++ re+ Vradi04g01980.1 429 DTIRFEDLKIEKNEFVAVNCMFELEHLLDESVVLDNPREAVLRLIKKANPDIFVHSIVNGSHDVPFFVSRFREALFHYSALFNMLETNIDREDP 522 ****************************************************************************************** PP GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373 +r + E+el+grei+n++aceg er+er +t+++W+ + ++ GF+ +pl++++ + +k lr+ + + +++e + g++++gWk+r L + S+W Vradi04g01980.1 523 TRLMFEKELFGREIMNIIACEGCERVERPQTYKQWQLQNMRIGFRLLPLDQRVIERIKNRLRQDAhDTNFMLEVDGGWVLQGWKGRILHASSCW 616 *********************************************************99987888*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	61.386	219	596	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.9E-107	245	616	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 620 aa Download sequence Send to blast
MDRRVSSTIN IANDEAESFY DESDVSAVLG YIKQMLMEED TEENDNSTGS SGSTSISSDS 60 QWSVDYNTPT LPNTFTFPDN FAFHSNSTST TQSSTNTGFG FLDNTLLDSA FQEQFKRGLE 120 QGTSFLPKHT PFIVDTDSTA FSAVPTVVIK TETEESVEEE HFLSVSRRRN RDQEEYEADG 180 RIRKTSATYV DESELSELLD KVVLGTGLGK RVPSDTALYQ NDETLLLANM FGGEVRKSDE 240 EVVDLRALLM LCAQAVASDS PSFAKQLLKQ IKQHSSPIGN DTQRLAHYFG NALEACLDGT 300 GFQVYSVLSS KRISAKDMVK AYCAYASVCP FEKITIIFAN KSICFQSENA ETVHVIDFGI 360 RYGFKWPSLI SILSKRPGGP PKLRITGIDQ PQPGFRPEER VLETGRRLEH YCKRFNVPFE 420 FNAIARKWDT IRFEDLKIEK NEFVAVNCMF ELEHLLDESV VLDNPREAVL RLIKKANPDI 480 FVHSIVNGSH DVPFFVSRFR EALFHYSALF NMLETNIDRE DPTRLMFEKE LFGREIMNII 540 ACEGCERVER PQTYKQWQLQ NMRIGFRLLP LDQRVIERIK NRLRQDAHDT NFMLEVDGGW 600 VLQGWKGRIL HASSCWVPA*

Sequence ? help Back to Top

Protein Sequence Length: 620 aa Download sequence Send to blast

MDRRVSSTIN IANDEAESFY DESDVSAVLG YIKQMLMEED TEENDNSTGS SGSTSISSDS  60
QWSVDYNTPT LPNTFTFPDN FAFHSNSTST TQSSTNTGFG FLDNTLLDSA FQEQFKRGLE  120
QGTSFLPKHT PFIVDTDSTA FSAVPTVVIK TETEESVEEE HFLSVSRRRN RDQEEYEADG  180
RIRKTSATYV DESELSELLD KVVLGTGLGK RVPSDTALYQ NDETLLLANM FGGEVRKSDE  240
EVVDLRALLM LCAQAVASDS PSFAKQLLKQ IKQHSSPIGN DTQRLAHYFG NALEACLDGT  300
GFQVYSVLSS KRISAKDMVK AYCAYASVCP FEKITIIFAN KSICFQSENA ETVHVIDFGI  360
RYGFKWPSLI SILSKRPGGP PKLRITGIDQ PQPGFRPEER VLETGRRLEH YCKRFNVPFE  420
FNAIARKWDT IRFEDLKIEK NEFVAVNCMF ELEHLLDESV VLDNPREAVL RLIKKANPDI  480
FVHSIVNGSH DVPFFVSRFR EALFHYSALF NMLETNIDRE DPTRLMFEKE LFGREIMNII  540
ACEGCERVER PQTYKQWQLQ NMRIGFRLLP LDQRVIERIK NRLRQDAHDT NFMLEVDGGW  600
VLQGWKGRIL HASSCWVPA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	3e-50	236	618	10	380	Protein SCARECROW
5b3h_A	2e-50	236	618	9	379	Protein SCARECROW
5b3h_D	2e-50	236	618	9	379	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi04g01980.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015040	0.0	AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014497664.1	0.0	scarecrow-like protein 14
Swissprot	Q9XE58	0.0	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A1S3TV68	0.0	A0A1S3TV68_VIGRR; scarecrow-like protein 14
STRING	XP_007150337.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	0.0	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]