PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi04g01970.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 1364aa    MW: 152893 Da    PI: 5.2888
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi04g01970.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS348.88.8e-1073457031359
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkf 93 
                      l++lL+ cA+a s++d++ a++lL+++++++s  gd+ qRla+y+++AL+arl++ ++++     + ++    ++++ l+a+++f  ++P+ kf
  Vradi04g01970.1 345 LRTLLVLCAQAASASDNRTANELLKQIRQHSSALGDASQRLAHYVANALEARLVGAGTGTQIFYmSYRNF---TTTDFLKAYQVFISACPFKKF 435
                      5789***************************************************555554322144444...499****************** PP

             GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakr 185
                      +h+ aN++I++ +e++e++HiiDf+i +G+QWp L++ L+sR++gpp+lRiTg++ p++g   +e++eetg+rLak++++++vpfe++++ +++
  Vradi04g01970.1 436 AHFFANKMIMKTAEKAETLHIIDFGILYGFQWPILIKFLSSRTGGPPKLRITGIEYPQPGfrPSERIEETGRRLAKYCNRFNVPFEYKAIPSRN 529
                      ***********************************************************9*****************************9999* PP

             GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279
                      +e++++e+L+++++E+laVn+ ++ ++lldes +++s+r++vLkl+++++P+++v +  + ++n++ F++rf eal +ys+++d++++ ++re+
  Vradi04g01970.1 530 WETIQIEDLKIESNEVLAVNCLVRFKNLLDESIEVSSPRNAVLKLIRKMNPHIFVQSVVNGSYNAPFFVTRFREALFHYSSIYDMFDTLVSREN 623
                      ********************************************************************************************** PP

             GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslv 359
                      e+r ++Ere+lgrei+nvvace  er+er et+++W+ r ++aGF+++pl+++ +++ +  lr+ + + +  +e+ g+++
  Vradi04g01970.1 624 EWRLMLEREFLGREIMNVVACEALERVERPETYKQWQVRNTRAGFRQLPLDKELMAKFRDKLREWYHKDFVFDEDGGWML 703
                      ******************************************************************888******99986 PP

2GRAS367.71.6e-11299513613374
             GRAS    3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94  
                       +lL++cA+av+s d+++a+ lL ++++++sp gd +qRla+yf+++L+ rla    ++ + +p + ++    ++ l+a++lf+  sP+ ++s
  Vradi04g01970.1  995 TLLTQCAQAVASFDQRNANDLLGQIKQHSSPFGDGLQRLAHYFAKGLEIRLAA---GTPSYVPLEVAT---AADMLKAYELFVTSSPLQRMS 1080
                       69**************************************************9...333334444444...789****************** PP

             GRAS   95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvak 184 
                       + +a +++   ve+e+ vHiiDf+i +G+QWp+L++ L++R++gpp+lRiTg++ p++g   +e++eetg+rLa+++++++vpfe+n  +a+
  Vradi04g01970.1 1081 NYLATRTVISLVENESSVHIIDFGICYGFQWPCLIKRLSERDGGPPRLRITGIDLPRPGfrPAERVEETGRRLANYCKKFNVPFEYNC-LAQ 1171
                       **********************************************************9*9***************************.6** PP

             GRAS  185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklp 276 
                       ++e+++l +L+++++E+++V++ ++l++l+de+v+++s+rd+vLkl+++++P+++++   +  ++++ Fl+rf eal+++s+lfd++ea++p
  Vradi04g01970.1 1172 KWETIKLADLKIDRNEVTVVSCFYRLKNLPDETVAVNSPRDAVLKLIRKINPNIFIHGVVNGTYSAPFFLTRFREALYHFSSLFDMFEANVP 1263
                       ******************************************************************************************** PP

             GRAS  277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLv 368 
                       re+++r + E+ llgr++ nv+acegaer+er et+++W+ r  +aGFk+v+++ + +++ak +++k + + + v e+ ++l++gWk+r L 
  Vradi04g01970.1 1264 REDSQRLMFEKGLLGRDAINVIACEGAERVERPETYKQWQVRNLRAGFKQVNFDPQLVNNAKQMVKKEYHKDFVVAEDGKWLLQGWKGRILN 1355
                       *********************************************************************888******************** PP

             GRAS  369 svSaWr 374 
                       ++SaW+
  Vradi04g01970.1 1356 AISAWT 1361
                       *****6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.403319698IPR005202Transcription factor GRAS
PfamPF035143.0E-104345703IPR005202Transcription factor GRAS
PROSITE profilePS5098564.2669671341IPR005202Transcription factor GRAS
PfamPF035145.5E-1109951361IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 1364 aa     Download sequence    Send to blast
MDPNTVMSGY EFDEWDFNGH YTNLLTDPFF SQSDVGPPGF SPNTILNSDP LVSSSADSAA  60
MVATVEEDTD FSETFKFISQ ILMEENFEQK PCMCYDPLTL QHTEKSFYDA LELEPPLPLS  120
PNQHPLESPD GNSSNSTTDS ANFHDLKPSS PNTPVSGGGE AFHSSTHAPS FFVPPSALTK  180
INDGTLDMDS SVSKLLAENI FNDAESMLQF RRGLEEASKF LPQKPQLFTG LESATVSAEP  240
KVGGELTVKR ENSIGVKSRK NHARQDEEEG RSNKHSEVCV DEENEISDIF DKVLLSVENV  300
PLCAGKNVSV AVGDSNAKLS EQSPSVDVGK VRSKRQGKKK ETVDLRTLLV LCAQAASASD  360
NRTANELLKQ IRQHSSALGD ASQRLAHYVA NALEARLVGA GTGTQIFYMS YRNFTTTDFL  420
KAYQVFISAC PFKKFAHFFA NKMIMKTAEK AETLHIIDFG ILYGFQWPIL IKFLSSRTGG  480
PPKLRITGIE YPQPGFRPSE RIEETGRRLA KYCNRFNVPF EYKAIPSRNW ETIQIEDLKI  540
ESNEVLAVNC LVRFKNLLDE SIEVSSPRNA VLKLIRKMNP HIFVQSVVNG SYNAPFFVTR  600
FREALFHYSS IYDMFDTLVS RENEWRLMLE REFLGREIMN VVACEALERV ERPETYKQWQ  660
VRNTRAGFRQ LPLDKELMAK FRDKLREWYH KDFVFDEDGG WMLQDTSSIS FLVEFNMLST  720
NSLVQNFGGT ISVFSDQNQV TEGIELDDSS SSSGTSSSGE STKYSNNILR YISDILMDEE  780
DDLLNKPCML QECLRLQAAE KSFLDVLVHD SHPSFSGESI GIADSDENFG RTVSFESNGS  840
CTTDNSCDSD FVNGVGEFDS SFLSQQTHLV YSPDVVDAFM VRDGTWNLFQ SHKKPFMVEE  900
GRSTSASREK RSHELDDDAG LEQDGRRGTK VSAVFSGESE SPEILDEVLL FQIGKSGCSS  960
EPSQGVDLGG SNGKGGRSRS KKGSSKAGTA VDLWTLLTQC AQAVASFDQR NANDLLGQIK  1020
QHSSPFGDGL QRLAHYFAKG LEIRLAAGTP SYVPLEVATA ADMLKAYELF VTSSPLQRMS  1080
NYLATRTVIS LVENESSVHI IDFGICYGFQ WPCLIKRLSE RDGGPPRLRI TGIDLPRPGF  1140
RPAERVEETG RRLANYCKKF NVPFEYNCLA QKWETIKLAD LKIDRNEVTV VSCFYRLKNL  1200
PDETVAVNSP RDAVLKLIRK INPNIFIHGV VNGTYSAPFF LTRFREALYH FSSLFDMFEA  1260
NVPREDSQRL MFEKGLLGRD AINVIACEGA ERVERPETYK QWQVRNLRAG FKQVNFDPQL  1320
VNNAKQMVKK EYHKDFVVAE DGKWLLQGWK GRILNAISAW TPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-4733413628380Protein SCARECROW
5b3h_A2e-4733413627379Protein SCARECROW
5b3h_D2e-4733413627379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi04g01970.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004486993.10.0uncharacterized protein LOC101504630
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A1S2XC160.0A0A1S2XC16_CICAR; uncharacterized protein LOC101504630
STRINGXP_004486993.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]