PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi04g01970.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | GRAS | ||||||||
Protein Properties | Length: 1364aa MW: 152893 Da PI: 5.2888 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 348.8 | 8.8e-107 | 345 | 703 | 1 | 359 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkf 93 l++lL+ cA+a s++d++ a++lL+++++++s gd+ qRla+y+++AL+arl++ ++++ + ++ ++++ l+a+++f ++P+ kf Vradi04g01970.1 345 LRTLLVLCAQAASASDNRTANELLKQIRQHSSALGDASQRLAHYVANALEARLVGAGTGTQIFYmSYRNF---TTTDFLKAYQVFISACPFKKF 435 5789***************************************************555554322144444...499****************** PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakr 185 +h+ aN++I++ +e++e++HiiDf+i +G+QWp L++ L+sR++gpp+lRiTg++ p++g +e++eetg+rLak++++++vpfe++++ +++ Vradi04g01970.1 436 AHFFANKMIMKTAEKAETLHIIDFGILYGFQWPILIKFLSSRTGGPPKLRITGIEYPQPGfrPSERIEETGRRLAKYCNRFNVPFEYKAIPSRN 529 ***********************************************************9*****************************9999* PP GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279 +e++++e+L+++++E+laVn+ ++ ++lldes +++s+r++vLkl+++++P+++v + + ++n++ F++rf eal +ys+++d++++ ++re+ Vradi04g01970.1 530 WETIQIEDLKIESNEVLAVNCLVRFKNLLDESIEVSSPRNAVLKLIRKMNPHIFVQSVVNGSYNAPFFVTRFREALFHYSSIYDMFDTLVSREN 623 ********************************************************************************************** PP GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslv 359 e+r ++Ere+lgrei+nvvace er+er et+++W+ r ++aGF+++pl+++ +++ + lr+ + + + +e+ g+++ Vradi04g01970.1 624 EWRLMLEREFLGREIMNVVACEALERVERPETYKQWQVRNTRAGFRQLPLDKELMAKFRDKLREWYHKDFVFDEDGGWML 703 ******************************************************************888******99986 PP | |||||||
2 | GRAS | 367.7 | 1.6e-112 | 995 | 1361 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 +lL++cA+av+s d+++a+ lL ++++++sp gd +qRla+yf+++L+ rla ++ + +p + ++ ++ l+a++lf+ sP+ ++s Vradi04g01970.1 995 TLLTQCAQAVASFDQRNANDLLGQIKQHSSPFGDGLQRLAHYFAKGLEIRLAA---GTPSYVPLEVAT---AADMLKAYELFVTSSPLQRMS 1080 69**************************************************9...333334444444...789****************** PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvak 184 + +a +++ ve+e+ vHiiDf+i +G+QWp+L++ L++R++gpp+lRiTg++ p++g +e++eetg+rLa+++++++vpfe+n +a+ Vradi04g01970.1 1081 NYLATRTVISLVENESSVHIIDFGICYGFQWPCLIKRLSERDGGPPRLRITGIDLPRPGfrPAERVEETGRRLANYCKKFNVPFEYNC-LAQ 1171 **********************************************************9*9***************************.6** PP GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklp 276 ++e+++l +L+++++E+++V++ ++l++l+de+v+++s+rd+vLkl+++++P+++++ + ++++ Fl+rf eal+++s+lfd++ea++p Vradi04g01970.1 1172 KWETIKLADLKIDRNEVTVVSCFYRLKNLPDETVAVNSPRDAVLKLIRKINPNIFIHGVVNGTYSAPFFLTRFREALYHFSSLFDMFEANVP 1263 ******************************************************************************************** PP GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLv 368 re+++r + E+ llgr++ nv+acegaer+er et+++W+ r +aGFk+v+++ + +++ak +++k + + + v e+ ++l++gWk+r L Vradi04g01970.1 1264 REDSQRLMFEKGLLGRDAINVIACEGAERVERPETYKQWQVRNLRAGFKQVNFDPQLVNNAKQMVKKEYHKDFVVAEDGKWLLQGWKGRILN 1355 *********************************************************************888******************** PP GRAS 369 svSaWr 374 ++SaW+ Vradi04g01970.1 1356 AISAWT 1361 *****6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 67.403 | 319 | 698 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.0E-104 | 345 | 703 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 64.266 | 967 | 1341 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.5E-110 | 995 | 1361 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 1364 aa Download sequence Send to blast |
MDPNTVMSGY EFDEWDFNGH YTNLLTDPFF SQSDVGPPGF SPNTILNSDP LVSSSADSAA 60 MVATVEEDTD FSETFKFISQ ILMEENFEQK PCMCYDPLTL QHTEKSFYDA LELEPPLPLS 120 PNQHPLESPD GNSSNSTTDS ANFHDLKPSS PNTPVSGGGE AFHSSTHAPS FFVPPSALTK 180 INDGTLDMDS SVSKLLAENI FNDAESMLQF RRGLEEASKF LPQKPQLFTG LESATVSAEP 240 KVGGELTVKR ENSIGVKSRK NHARQDEEEG RSNKHSEVCV DEENEISDIF DKVLLSVENV 300 PLCAGKNVSV AVGDSNAKLS EQSPSVDVGK VRSKRQGKKK ETVDLRTLLV LCAQAASASD 360 NRTANELLKQ IRQHSSALGD ASQRLAHYVA NALEARLVGA GTGTQIFYMS YRNFTTTDFL 420 KAYQVFISAC PFKKFAHFFA NKMIMKTAEK AETLHIIDFG ILYGFQWPIL IKFLSSRTGG 480 PPKLRITGIE YPQPGFRPSE RIEETGRRLA KYCNRFNVPF EYKAIPSRNW ETIQIEDLKI 540 ESNEVLAVNC LVRFKNLLDE SIEVSSPRNA VLKLIRKMNP HIFVQSVVNG SYNAPFFVTR 600 FREALFHYSS IYDMFDTLVS RENEWRLMLE REFLGREIMN VVACEALERV ERPETYKQWQ 660 VRNTRAGFRQ LPLDKELMAK FRDKLREWYH KDFVFDEDGG WMLQDTSSIS FLVEFNMLST 720 NSLVQNFGGT ISVFSDQNQV TEGIELDDSS SSSGTSSSGE STKYSNNILR YISDILMDEE 780 DDLLNKPCML QECLRLQAAE KSFLDVLVHD SHPSFSGESI GIADSDENFG RTVSFESNGS 840 CTTDNSCDSD FVNGVGEFDS SFLSQQTHLV YSPDVVDAFM VRDGTWNLFQ SHKKPFMVEE 900 GRSTSASREK RSHELDDDAG LEQDGRRGTK VSAVFSGESE SPEILDEVLL FQIGKSGCSS 960 EPSQGVDLGG SNGKGGRSRS KKGSSKAGTA VDLWTLLTQC AQAVASFDQR NANDLLGQIK 1020 QHSSPFGDGL QRLAHYFAKG LEIRLAAGTP SYVPLEVATA ADMLKAYELF VTSSPLQRMS 1080 NYLATRTVIS LVENESSVHI IDFGICYGFQ WPCLIKRLSE RDGGPPRLRI TGIDLPRPGF 1140 RPAERVEETG RRLANYCKKF NVPFEYNCLA QKWETIKLAD LKIDRNEVTV VSCFYRLKNL 1200 PDETVAVNSP RDAVLKLIRK INPNIFIHGV VNGTYSAPFF LTRFREALYH FSSLFDMFEA 1260 NVPREDSQRL MFEKGLLGRD AINVIACEGA ERVERPETYK QWQVRNLRAG FKQVNFDPQL 1320 VNNAKQMVKK EYHKDFVVAE DGKWLLQGWK GRILNAISAW TPA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 2e-47 | 334 | 1362 | 8 | 380 | Protein SCARECROW |
5b3h_A | 2e-47 | 334 | 1362 | 7 | 379 | Protein SCARECROW |
5b3h_D | 2e-47 | 334 | 1362 | 7 | 379 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi04g01970.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004486993.1 | 0.0 | uncharacterized protein LOC101504630 | ||||
Swissprot | Q9XE58 | 0.0 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | A0A1S2XC16 | 0.0 | A0A1S2XC16_CICAR; uncharacterized protein LOC101504630 | ||||
STRING | XP_004486993.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF131 | 34 | 339 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 0.0 | SCARECROW-like 14 |
Publications ? help Back to Top | |||
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