PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi04g01740.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 313aa    MW: 35451.4 Da    PI: 5.6051
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi04g01740.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.21.2e-151663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l+++    G g+W+ +ar  g+ R++k+c++rw +yl
  Vradi04g01740.1 16 KGLWSPEEDEKLINYMLNNGQGCWSDVARNAGLQRCGKSCRLRWINYL 63
                     678*******************************************97 PP
2Myb_DNA-binding482.9e-1569112146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++++E++l+++ +  lG++ W+ Ia++++ gRt++++k++w++
  Vradi04g01740.1  69 RGAFSPQEEQLIIHFHSFLGNR-WSQIAARLP-GRTDNEIKNFWNS 112
                      89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.3461163IPR017930Myb domain
SuperFamilySSF466891.52E-2714110IPR009057Homeodomain-like
SMARTSM007173.9E-111565IPR001005SANT/Myb domain
PfamPF002494.9E-141663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.3E-231770IPR009057Homeodomain-like
CDDcd001671.80E-91963No hitNo description
PROSITE profilePS5129423.68864118IPR017930Myb domain
SMARTSM007171.1E-1468116IPR001005SANT/Myb domain
PfamPF002493.7E-1469112IPR001005SANT/Myb domain
CDDcd001672.87E-1071111No hitNo description
Gene3DG3DSA:1.10.10.606.5E-2571119IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MRKPELCSGK DSKFRKGLWS PEEDEKLINY MLNNGQGCWS DVARNAGLQR CGKSCRLRWI  60
NYLRPDLKRG AFSPQEEQLI IHFHSFLGNR WSQIAARLPG RTDNEIKNFW NSTIKKRLKN  120
MSTTTASTSP NSSETSSEPS NKDLNMGGFM PTQHHQHATF VPVFGSSQTQ SMQTTVFNTM  180
IERLDHELNM PHVGEYLEGT GPCFSQNEAH NKSSYLDNGV FGSVNIGVEG DMFVPPLENL  240
NTSNNHNLSS TCKRETNSSY FDDINSILNN CNIGISSENK EEVENLFQQD AEWDFEELMK  300
DVSSFPFVDF SF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-27161187108B-MYB
1h8a_C3e-271611827128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as molecular switch in the NAC012/SND1-mediated transcriptional network regulating secondary wall biosynthesis. Is directly activated by NAC012/SND1 and its close homologs, including NAC043/NST1, NAC066/NST2, NAC101/VND6 and NAC030/VND7. Is required for functional expression of a number of secondary wall-associated transcription factors and secondary wall biosynthetic genes involved in cellulose, xylan and lignin synthesis. Functions redundantly with MYB46 in the transcriptional regulatory cascade leading to secondary wall formation in fibers and vessels (PubMed:19808805). Transcription activator that binds to the DNA consensus sequence 5'-ACC[AT]A[AC][TC]-3', designated as the secondary wall MYB-responsive element (SMRE). Regulates directly numerous transcription factors and a number of genes involved in secondary wall biosynthesis that contain SMRE elements in their promoters (PubMed:22197883). {ECO:0000269|PubMed:19808805, ECO:0000269|PubMed:22197883}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00336DAPTransfer from AT3G08500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi04g01740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022635231.10.0transcription factor MYB46
SwissprotQ9C6U12e-74MYB83_ARATH; Transcription factor MYB83
TrEMBLA0A3Q0EVN00.0A0A3Q0EVN0_VIGRR; transcription factor MYB46
STRINGXP_007150366.11e-170(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77434128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.13e-72myb domain protein 46
Publications ? help Back to Top
  1. Vargas L, et al.
    Improving total saccharification yield of Arabidopsis plants by vessel-specific complementation of caffeoyl shikimate esterase (cse) mutants.
    Biotechnol Biofuels, 2016. 9: p. 139
    [PMID:27390589]
  2. Piya S,Kihm C,Rice JH,Baum TJ,Hewezi T
    Cooperative Regulatory Functions of miR858 and MYB83 during Cyst Nematode Parasitism.
    Plant Physiol., 2017. 174(3): p. 1897-1912
    [PMID:28512179]