PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi04g01180.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family FAR1
Protein Properties Length: 741aa    MW: 84903.1 Da    PI: 7.4209
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi04g01180.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR164.33.4e-2060145191
             FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                      +fY++YA ++GF vr+++skk + n+ ++  ++vCs+egk  ++ +    e +t +++  +C a ++++k+ d+kw + +++l+HnHel+p
  Vradi04g01180.1  60 NFYKNYAIRCGFAVRTRTSKKDDYNN-VIYLRLVCSREGKYVSSINP---EVKTLPSQTNQCPAGITISKK-DDKWFIRTVNLNHNHELCP 145
                      6*****************99996666.999***********998877...999*****************9.9****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.9E-1760145IPR004330FAR1 DNA binding domain
PfamPF105513.2E-36265359IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 741 aa     Download sequence    Send to blast
MSEVPECNVN IDDFGMIDSS TSNINEVSDC NVNLDEHTAS GLEVDPTLHM CFDSMDDAKN  60
FYKNYAIRCG FAVRTRTSKK DDYNNVIYLR LVCSREGKYV SSINPEVKTL PSQTNQCPAG  120
ITISKKDDKW FIRTVNLNHN HELCPNTSKL IPGNRKLSMQ AKRTLEVNDE AEVRINKSYL  180
CVMTDAGGYD SMDFIERDAR NYISQHKRSL CKDGDGQALL RHFSAMKDLN KEFFYKIELD  240
EGNRICSVFW ADARSRAACE EFGDVVCFNT TYLTNKYDMP FMPFVGINHH GHSILLGCGL  300
LSSEDTRSFV WLFQSWLRCI SNKAPKGIIT DQCRAMANAI EEVFSNTRHR WCLWHIMKKL  360
LEKFSAYKEY NHIKSAINKL VYDCGCVADF ESGWEALLSR HGLHQNEWLC TMYDERQKWV  420
PCFLRNHFWA GMSITQRSEG MNAFFDGFIN SSTTLQQFVA QYDNALRVKA QKEIQADFSS  480
LNTTVGCGSQ SPIERQFQQE YTHSKFEEVQ MEFRGIICRH SLLVFGQEDV CSVPSKYVLR  540
RWSKNIRRRH TLIRAAYINS NLEPTMQRYQ SLCKTFYEIA EVACESEPVS NELEKELRLL  600
RQKFGCSLMM TNNIVSDGGE LRYDNAVPNF VPETVGEGVD LLVRNPVAVK RKGRPHTNRM  660
KSAVEKRTKK GKSASTQKTS RTSVEECGTR LPNVGQTQDH LQFETQGYQC YEVSQQSNMN  720
QSGFMSLLNA VHNNFDDNIV *
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi04g01180.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014496683.10.0protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A1S3TSD50.0A0A1S3TSD5_VIGRR; protein FAR-RED IMPAIRED RESPONSE 1-like
STRINGXP_007134998.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.11e-107FAR1 family protein