PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0456s00020.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family LFY
Protein Properties Length: 333aa    MW: 37224.3 Da    PI: 8.315
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0456s00020.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY192.82.6e-5911681159
            FLO_LFY   1 mdpeafsaslfkwdpraaa.....aapparlleeaavseapleaaaa..aaarklreleelfkayGvryltvakiaelGftvstLvdmkdee 85 
                        mdp+af+aslfkwdpr++      + pp  ll  a++++a +++ +   aa r+l +leelf+ayG+ry+t+akiaelGftvstLvdmkdee
  Vradi0456s00020.1   1 MDPDAFTASLFKWDPRTVLpaappSRPPPPLLDYAVAPPAVAQSYHParAAPRELGGLEELFQAYGIRYYTAAKIAELGFTVSTLVDMKDEE 92 
                        9**************99986443322334454444444443333333003334477************************************ PP

            FLO_LFY  86 lddlmkslseifrldllvGeryGikaavraerrrleeeeaekkrrkllsedeet..aldalsqeglseepvqeeke 159
                        ldd+m+sls+ifr+dllvGeryGikaavraerrr++ee+ +++  +lls+d++t  aldalsqeg+   p++++  
  Vradi0456s00020.1  93 LDDMMNSLSQIFRWDLLVGERYGIKAAVRAERRRIDEEDIKRRTGNLLSTDTTTtnALDALSQEGTPSRPSRRTAV 168
                        ***************************************999999999998876669********98877766444 PP
2FLO_LFY247.65.8e-76212318280386
            FLO_LFY 280 kvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdidavfnahprLsiWYvP 371
                        +vtnqvfryakkagasyinkPkmrhYvhCYalhcLdee sn+lrrafkergenvGawrqacykplvaiaarqgwdida+fnahprLsiWYvP
  Vradi0456s00020.1 212 QVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEVSNELRRAFKERGENVGAWRQACYKPLVAIAARQGWDIDAIFNAHPRLSIWYVP 303
                        7******************************************************************************************* PP

            FLO_LFY 372 tkLrqLChlerskas 386
                        tkLrqLCh+er++a+
  Vradi0456s00020.1 304 TKLRQLCHAERNTAA 318
                        ***********9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF016983.1E-631165IPR002910Floricaula/leafy protein
PfamPF016982.4E-74212317IPR002910Floricaula/leafy protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0031490Molecular Functionchromatin DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MDPDAFTASL FKWDPRTVLP AAPPSRPPPP LLDYAVAPPA VAQSYHPARA APRELGGLEE  60
LFQAYGIRYY TAAKIAELGF TVSTLVDMKD EELDDMMNSL SQIFRWDLLV GERYGIKAAV  120
RAERRRIDEE DIKRRTGNLL STDTTTTNAL DALSQEGTPS RPSRRTAVKN APPRYSCHES  180
CITHSLTQPC LCSDHSDSAT HLRCLELYMG MQVTNQVFRY AKKAGASYIN KPKMRHYVHC  240
YALHCLDEEV SNELRRAFKE RGENVGAWRQ ACYKPLVAIA ARQGWDIDAI FNAHPRLSIW  300
YVPTKLRQLC HAERNTAAAS SSVSVGSAHL PF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2vy1_A2e-6721232758173PROTEIN LEAFY
2vy2_A2e-6721232758173PROTEIN LEAFY
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00095SELEXTransfer from AT5G61850Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0456s00020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014630701.11e-161protein UNIFOLIATA-like
SwissprotO040641e-132FLLH_POPTR; Floricaula/leafy homolog
TrEMBLA0A0R0KH091e-159A0A0R0KH09_SOYBN; Uncharacterized protein
STRINGGLYMA04G37900.21e-161(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80333346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.12e-66floral meristem identity control protein LEAFY (LFY)
Publications ? help Back to Top
  1. Tuskan GA, et al.
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).
    Science, 2006. 313(5793): p. 1596-604
    [PMID:16973872]