PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0450s00050.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HD-ZIP
Protein Properties Length: 655aa    MW: 72735.6 Da    PI: 6.2094
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0450s00050.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.61e-1860115156
                        TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        +++ +++t+eq+ e+e +F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R++ k
  Vradi0450s00050.1  60 KKRYHRHTNEQIMEMECFFKECPHPDDRQRRELSRELGLDMLQVKFWFQNKRTQVK 115
                        688999**********************************************9877 PP
2START72.61e-232563856117
                        HHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEE CS
              START   6 aaqelvkkalaeepgWvkss...esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevi 85 
                        a++e+  +a+a+ p+W       e++n+de+l++f+++ +      ++ea+r s+vv+m+  +lve+++d++ qW +++     +a++++v+
  Vradi0450s00050.1 256 AMKEFTNLAEAGNPLWLPGNcgcEILNQDEYLRSFPKGIGptpldVKIEASRHSAVVIMDYNKLVEIFMDVN-QWANMFCgiisRAAIHQVL 346
                        799**************999*****************999****99**************************.******99*********** PP

                        CTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE CS
              START  86 ssg......galqlmvaelqalsplvp.RdfvfvRyirq 117
                        + g      ga q+m+ae+q++splvp Rd +fvR++ +
  Vradi0450s00050.1 347 EVGqteifdGACQVMSAEFQVPSPLVPvRDDYFVRFSAT 385
                        ***********************************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.43E-1853123IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.7E-1954124IPR009057Homeodomain-like
PROSITE profilePS5007116.03457117IPR001356Homeobox domain
SMARTSM003899.2E-1859121IPR001356Homeobox domain
PfamPF000463.3E-1660115IPR001356Homeobox domain
CDDcd000861.37E-1760118No hitNo description
PROSITE patternPS00027092115IPR017970Homeobox, conserved site
PROSITE profilePS5084813.724242381IPR002913START domain
SuperFamilySSF559614.94E-9245383No hitNo description
PfamPF018522.6E-16256383IPR002913START domain
SuperFamilySSF559612.01E-23416646No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 655 aa     Download sequence    Send to blast
MYQYNSNSWN SQQQQQSILE RPPQRTFLEN GLGRNIDGES STNERKAPSS NRDPGKQSGK  60
KRYHRHTNEQ IMEMECFFKE CPHPDDRQRR ELSRELGLDM LQVKFWFQNK RTQVKSQHER  120
HENNLLKAEN DKLREENTRY KEALSHASCP NCGGLSGEMS FDEQQLRAEN MRLREEIEKM  180
SAMIPRFAVK PGSLYHNMSS QNQMIPPRSL DQGVGNYGAQ TVMIGEMFGS NDEPLGALPI  240
ASDFEKDIVM EIGSVAMKEF TNLAEAGNPL WLPGNCGCEI LNQDEYLRSF PKGIGPTPLD  300
VKIEASRHSA VVIMDYNKLV EIFMDVNQWA NMFCGIISRA AIHQVLEVGQ TEIFDGACQV  360
MSAEFQVPSP LVPVRDDYFV RFSATWFIHK KPKTTLWLPN HRIAKWLLKV LTNSGGRRCM  420
MRLAERMMLS FCTAVGASTA NAWTLLTEAG EDVRVMTRKS VDDPGRPSGI VLSASTSFWL  480
PIPSRTVFDF LRSENSRNQW DILSNGGQVE ELAHIANGHD SGNCVSLLRV NTPNFGQSNM  540
TMLQETCTDA TGSFVVYAPV DLISMNAVLR GGNPDCVALL PSGFAVLPDG PEPMNNGGSI  600
GEVGSGGCLL TVAFQILVDS VPTSKLSATS VTTVSSLIKC IVERIQAVVC NGGT*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269|PubMed:12505995}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0450s00050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027935636.10.0homeobox-leucine zipper protein MERISTEM L1-like
SwissprotQ93V990.0PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2
TrEMBLA0A4D6N6960.0A0A4D6N696_VIGUN; Homeobox-leucine zipper protein
STRINGXP_007143210.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2300644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]