PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0441s00060.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 117aa    MW: 13695.1 Da    PI: 11.2475
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0441s00060.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH383e-123075655
                       HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                       +++Er RR ri +++ +L+el+P+      k  s  e+L +Av++Ik+Lq
  Vradi0441s00060.1 30 SIAERVRRTRISERIRKLQELVPNM----EKQTSTTEMLDLAVDHIKNLQ 75
                       689*********************7....467*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.5132474IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-152783IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.67E-92877No hitNo description
Gene3DG3DSA:4.10.280.105.9E-132988IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-93075IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-93080IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF009573.0E-1044113IPR001388Synaptobrevin
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016192Biological Processvesicle-mediated transport
GO:0016021Cellular Componentintegral component of membrane
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
MFSMDNLLQF NDSVPCKIRA KSGFATHPRS IAERVRRTRI SERIRKLQEL VPNMEKQTST  60
TEMLDLAVDH IKNLQNQFKA QDFRQQGTKI RRKMWFQNMK IKLIVLDIFA GCIAQR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0441s00060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150374e-43AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014492120.17e-52transcription factor bHLH130-like
SwissprotQ66GR32e-36BH130_ARATH; Transcription factor bHLH130
TrEMBLA0A1S3TEB92e-50A0A1S3TEB9_VIGRR; transcription factor bHLH130-like
STRINGXP_007162279.12e-45(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91323043
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.12e-28bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]