PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0438s00010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bZIP
Protein Properties Length: 201aa    MW: 23348.7 Da    PI: 6.8567
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0438s00010.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_151.81.8e-1683141563
                        CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                        ++ rr+++NRe+ArrsR RK++ ++eL   v  L +eN++L+++l++ +++ +++ +e+
  Vradi0438s00010.1  83 RKHRRMISNRESARRSRMRKQKHLDELWSQVMWLRNENHQLIDKLNHVSENHDQVLQEN 141
                        578*************************************************9999987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.9E-1479143IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.63481144IPR004827Basic-leucine zipper domain
PfamPF001702.1E-1483141IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.25E-1383133No hitNo description
Gene3DG3DSA:1.20.5.1703.2E-1283155No hitNo description
CDDcd147024.04E-1784135No hitNo description
PROSITE patternPS00036086101IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MQSREVSALN YLLPSNPSPY PPNNNFNTIQ NNIPTFQFQR FSSQLYGHNH NTPYDFSPQS  60
SCISSNSTSD EADEQQLTLI NERKHRRMIS NRESARRSRM RKQKHLDELW SQVMWLRNEN  120
HQLIDKLNHV SENHDQVLQE NAQLKEEASE LRQMIRDMQI HSPSPSFTPF QDHHVPCTSP  180
FLRSDSSNQS NSCNNIDLLG *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
195102RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00389DAPTransfer from AT3G30530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0438s00010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014522205.11e-146basic leucine zipper 43
SwissprotQ9FMC22e-42BZP43_ARATH; Basic leucine zipper 43
TrEMBLA0A1S3VV691e-144A0A1S3VV69_VIGRR; basic leucine zipper 43
STRINGXP_007151433.13e-98(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16043399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30530.12e-54basic leucine-zipper 42
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]