PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi03g10220.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NF-X1
Protein Properties Length: 871aa    MW: 96612.5 Da    PI: 8.3863
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi03g10220.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X1186.3e-06242260119
         zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                      CG H C + CH+G CppC+
  Vradi03g10220.1 242 CGAHHCTEVCHRGACPPCR 260
                      ******************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578503.04E-572150No hitNo description
PROSITE patternPS01359078144IPR019786Zinc finger, PHD-type, conserved site
CDDcd060082.49E-7178226No hitNo description
SMARTSM004380.072190208IPR000967Zinc finger, NF-X1-type
CDDcd060089.79E-9232280No hitNo description
SMARTSM004380.0018242261IPR000967Zinc finger, NF-X1-type
CDDcd060087.10E-10285332No hitNo description
SMARTSM004389.1E-4295314IPR000967Zinc finger, NF-X1-type
CDDcd060084.19E-8339382No hitNo description
SMARTSM004380.16349369IPR000967Zinc finger, NF-X1-type
SMARTSM00438170493508IPR000967Zinc finger, NF-X1-type
SMARTSM0043873516561IPR000967Zinc finger, NF-X1-type
SMARTSM004381.7598625IPR000967Zinc finger, NF-X1-type
SMARTSM004380.016635653IPR000967Zinc finger, NF-X1-type
SMARTSM0043861698720IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 871 aa     Download sequence    Send to blast
MTSAWTRPLS HPSPPPPTIL SDSDSDADGL SSGTEAHRHS DLSDSIFKPY LEFSGHSGAD  60
LSKIQSFLTS SSAGALSCLI CLERIKPSDP TWSCSSLCFA VFHLICIQSW ARQASDLAAA  120
RAAIRLPISA ATAYDTALWN CPKCRSEYPK SLIPKMYLCF CGKVENPPND PWVLPHSCGE  180
VCGRPLKHNC GHHCLLLCHP GPCPSCPKLV KVRCFCGSIE DVRRCGFKEF SCNNPCSKVL  240
DCGAHHCTEV CHRGACPPCR TRGVYACQCR KVKEEKECCD RVFQCDHPCE KRLSCGKHVC  300
ERGCHSGECG ECPLKGKRTC PCGKRIYEGM PCDASVQLCG ATCDKMLPCG YHRCPERCHR  360
GQCVETCRVV VKKSCRCGSL KKDSRFLAIK IWHVKGSVRG CVTVVGMLAS GAAVMGIALP  420
AQRYAEGGFD VRTINALLHV IGPCAPCPIM VTISCACGET RFEVPCGTEM DQKPPRCPKP  480
CPITPLCRHA SNCKPHKCHY GACHPCRLPC AREYQCGHTC KLRCHGPKPP PKPEFTLKPK  540
KKKIIQQSEG VPGTPCPPCP ELVWRSCVGQ HIGADRMMVC SDKSQFSCEN LCGNPLPCGN  600
HYCTKTCHAL DSQLRGSEPC EDCYLRCQKE REPACPHNCP RSCHPGDCPP CKVLIKRSCH  660
CGAMVHVFEC IYYNSLSAKD QETVRSCGGP CHRKLPNCTH LCPETCHPGE CTNAEKCCKK  720
VTVRCKCQTL KKEWVCQDVQ AAYHLMGCHP RDTPKNQFGI GLIPCNSDCK SKVQVVESEL  780
QLRKSRVTEV QDQDAEKSVR KRRKRRERVL ESKETSKLQK IISGAKRFLL FVFILIILVA  840
ATYYWYKGLL RLSDWMNEVD EQRQRYSRIK *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1799805RKRRKRR
2799806RKRRKRRE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi03g10220.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014496252.10.0NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLA0A1S3TRA60.0A0A1S3TRA6_VIGRR; NF-X1-type zinc finger protein NFXL2
STRINGXP_007163547.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102253237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors