PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi03g09040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | Nin-like | ||||||||
Protein Properties | Length: 306aa MW: 35882.6 Da PI: 6.6037 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 83.2 | 2.5e-26 | 167 | 216 | 3 | 52 |
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++s e++s+yF++pi +AAkeL+v+lT LK++CR++GI+RWPhRk+ sl Vradi03g09040.1 167 RNLSRETVSQYFYMPISQAAKELNVGLTHLKKRCRELGIQRWPHRKLMSL 216 699********************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 18.019 | 152 | 237 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 3.4E-22 | 168 | 216 | IPR003035 | RWP-RK domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0051302 | Biological Process | regulation of cell division |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MENHQLTFWN SNYQIDENSF APTCQFSSYD YFRFFPLLYF STLLSFHVRK SYHVSIFNFC 60 RGNASDGFHW PYEFPLQDSY FDVVPFMKCY YPHDILYETL PLEPTPLSFQ GYYDFSDVKN 120 VLSAWNEVDV SDHKPAFSSS NDGGSVNDTM EEVKGKHREE RISSSARNLS RETVSQYFYM 180 PISQAAKELN VGLTHLKKRC RELGIQRWPH RKLMSLQTLI KNMQEQVESE GPENDEKIRT 240 AIEMLEKEKS SVEQKPDLEL EDKTRRLRQA CFKANYKKRK LMTMRIMEPN LPLLPYPTSI 300 DKGGE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi03g09040.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 1e-157 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014495091.1 | 0.0 | protein RKD1 | ||||
TrEMBL | A0A1S3TMU6 | 0.0 | A0A1S3TMU6_VIGRR; protein RKD1 | ||||
STRING | GLYMA06G20881.1 | 1e-129 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6184 | 30 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18790.1 | 9e-54 | RWP-RK domain-containing protein |