PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi03g08290.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 258aa    MW: 28976.5 Da    PI: 8.6713
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi03g08290.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.00015880123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C+ C++ F++   L  H+++H
  Vradi03g08290.1 58 YSCNFCKREFRSAQALGGHMNVH 80
                     99*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.96E-65584No hitNo description
PROSITE profilePS5015711.2195885IPR007087Zinc finger, C2H2
PfamPF139127.0E-65881IPR007087Zinc finger, C2H2
SMARTSM003550.00725880IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806080IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MEESQYLLWF KRKQILNSHI QQPFGARINN TNSSWEERAF AEDAARILGG CIWPPRSYSC  60
NFCKREFRSA QALGGHMNVH RRDRARLKQS LVHPNESFQH LHKNDCSVAA SKASSSRPST  120
ISTQENCYHQ PTMSPYSSSF SWGHHHMGSS DSEPKGSAVN GREQFLKGSD CNDYVETSLS  180
VGQSSVFGQK LPIESYGDEA ISYKRSKTSM PPLPVFHKPC SSDRHLTFHS AEFVLGLKPG  240
MEDLDLELRL GKPQKVI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A1e-125380229superman protein
2l1o_A1e-125380229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi03g08290.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014495687.10.0probable transcriptional regulator RABBIT EARS
TrEMBLA0A1S3TPN50.0A0A1S3TPN5_VIGRR; probable transcriptional regulator RABBIT EARS
STRINGXP_007163443.11e-176(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17763078
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.12e-27zinc-finger protein 10