PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi03g07760.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

C2H2

Protein Properties

Length: 277aa MW: 30361.9 Da PI: 6.4394

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi03g07760.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12	0.00063	123	145	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ F ++ L H++ H Vradi03g07760.1 123 FSCNYCNRKFLSSQALGGHQNAH 145 89**************9999988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.02E-6	121	150	No hit	No description
PROSITE profile	PS50157	11.635	123	150	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	125	145	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MSMKMCICAR LPPLSMKQDF DLEVVASAEY ESEVSSQVAS NISIQETCAG PCSDNLINSP 60 HVTKPIEFHL HSDAISLDLT LNFNNNDLVV TDSTGLSFSS TTSESNNDPP SQSTPSQTMP 120 RVFSCNYCNR KFLSSQALGG HQNAHKRERT LAKRALRMGF FSERYVSLAS LPLHGSFRSL 180 GIKAHSSLHH GFSPTMRPPE TKSSARFEQG YVGFPIFLEE DEAELLWQGS YHQVPSNGGH 240 THQNFTLSGT SNLSFNGVNH PPVDIENSAP ELTLKL*

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269\|PubMed:24808098}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi03g07760.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	0.0	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014494828.1	0.0	zinc finger protein 4
Refseq	XP_014494829.1	0.0	zinc finger protein 4
Refseq	XP_022635100.1	0.0	zinc finger protein 4
Refseq	XP_022635101.1	0.0	zinc finger protein 4
Refseq	XP_022635102.1	0.0	zinc finger protein 4
Refseq	XP_022635103.1	0.0	zinc finger protein 4
Swissprot	Q39263	7e-43	ZFP4_ARATH; Zinc finger protein 4
TrEMBL	A0A1S3TM35	0.0	A0A1S3TM35_VIGRR; zinc finger protein 4
STRING	XP_007163363.1	1e-159	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1323	31	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66140.1	9e-45	zinc finger protein 4

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Joseph MP, et al. The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development. Plant Physiol., 2014. 165(3): p. 1203-1220 [PMID:24808098] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]