PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi03g07470.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family TALE
Protein Properties Length: 306aa    MW: 34827.6 Da    PI: 5.6832
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi03g07470.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.55.5e-092462802155
                      HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
         Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                      + +yp++ee+ +L++ +gL+++q+ +WF N+R ++
  Vradi03g07470.1 246 RWPYPTEEEKVKLSEVTGLDQKQINNWFINQRKRH 280
                      468*****************************885 PP
2ELK30.58.4e-11201221222
              ELK   2 LKhqLlrKYsgyLgsLkqEFs 22 
                      LK++LlrKYsg+ + L++EF+
  Vradi03g07470.1 201 LKEMLLRKYSGHFSALRKEFL 221
                      9*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.2E-1958102IPR005540KNOX1
PfamPF037909.2E-2060101IPR005540KNOX1
SMARTSM012565.7E-25105156IPR005541KNOX2
PfamPF037911.4E-23110155IPR005541KNOX2
SMARTSM011881.8E-5200221IPR005539ELK domain
PROSITE profilePS512139.865200220IPR005539ELK domain
PfamPF037892.2E-8201221IPR005539ELK domain
PROSITE profilePS5007112.633220283IPR001356Homeobox domain
SuperFamilySSF466899.84E-19222292IPR009057Homeodomain-like
SMARTSM003893.2E-13222287IPR001356Homeobox domain
CDDcd000864.70E-14223283No hitNo description
Gene3DG3DSA:1.10.10.601.6E-25225284IPR009057Homeodomain-like
PfamPF059204.5E-16240279IPR008422Homeobox KN domain
PROSITE patternPS000270258281IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MEAVYRLKPL LPCVEDVLRV GNAAVTTTSD MRLGTTPNCY LQLEAPEPNV TESDMTDRMV  60
KIQIADHPLY PDLLSAYIEC RKVGAPPELA CLLEEIGRES HRMNVRREKG DGPELDQFME  120
TYCEVLHRYK EELSRPFNEA TLFLGNMESQ LSNLCNGTLS KSADNNHSGG GASEEELSCG  180
EMEEVEGRIS SSLSCQGDQN LKEMLLRKYS GHFSALRKEF LKRRKKGKLP KDSKMALMDW  240
WNTHHRWPYP TEEEKVKLSE VTGLDQKQIN NWFINQRKRH WKPTDDMRFA VMDGLSGVDG  300
GAMFF*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi03g07470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0959740.0BT095974.1 Soybean clone JCVI-FLGm-20M5 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014496285.10.0homeobox protein knotted-1-like 1 isoform X2
SwissprotQ9FP293e-89KNOS1_ORYSJ; Homeobox protein knotted-1-like 1
TrEMBLA0A1S3TR850.0A0A1S3TR85_VIGRR; homeobox protein knotted-1-like 1 isoform X2
STRINGGLYMA03G39041.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62034125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.13e-83KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Park SH, et al.
    A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice.
    Planta, 2007. 227(1): p. 1-12
    [PMID:17624547]