PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi03g07250.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 365aa    MW: 41695.6 Da    PI: 8.2115
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi03g07250.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.00083214238123
                      EEETTTTEEESSHHHHHHHHHH..T CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirt..H 23 
                      + C  C+k ++  ++++ H+++  H
  Vradi03g07250.1 214 FYCDLCNKQYKLAMEFEAHLSSydH 238
                      78*****************987555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004436.2E-1992137IPR000467G-patch domain
PROSITE profilePS5017416.8794139IPR000467G-patch domain
PfamPF015852.8E-1695135IPR000467G-patch domain
SuperFamilySSF576674.06E-5212248No hitNo description
PfamPF121712.1E-5214241IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280216238IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MPHSPFDHEN FTVAGVPSST YPFLSSFKMD YRWTNGRPDT GGRDRRQSKR EQAYQDSLVE  60
DLSEDFRLPI NHRPTENVDL DNVEQASLDT QLTSSNIGFK LLQKMGWKGK GLGKDEQGIT  120
EPIKSGIRDP RLGVGKQEED DFFTAEENIQ RKKLDVELEE TEEHVKKREV LRISCSFYYL  180
VASSACFVHI MKIQVLAERE QKIQTEVKEI RKVFYCDLCN KQYKLAMEFE AHLSSYDHNH  240
RKRFKQMKEM HGGGSRDDRQ KREQQRQERE MAKFAQIADA QKQQRLQLQQ ESGSGTVSSE  300
SRTATALTDQ EQRNTLKFGF SSKGSGSKVC PAGSRITFGA KKQNVAKKQS APISSIFSND  360
SDEE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi03g07250.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5150301e-171AJ515030.1 Cicer arietinum partial mRNA for hypothetical protein (292 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014629465.10.0G patch domain-containing protein 8 isoform X1
RefseqXP_028226434.10.0G patch domain-containing protein 8-like isoform X1
TrEMBLA0A1S3TLX80.0A0A1S3TLX8_VIGRR; G patch domain-containing protein 8
STRINGXP_007163288.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59772428