PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi03g06970.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 494aa    MW: 54657.6 Da    PI: 8.1185
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi03g06970.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.72.4e-14300345454
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       hn  E++RR++iN+++ +L+el+P++      K++Ka++L  A+eY+k L
  Vradi03g06970.1 300 VHNLSEKKRREKINKKMRTLKELIPNC-----NKVDKASMLDDAIEYLKTL 345
                      6*************************8.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.33E-19295360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.409296345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.81E-15299350No hitNo description
PfamPF000105.6E-12300345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.6E-18300354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.9E-16302351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MIHDMPDSTR SAMTRTSDSI YDNDFLELVW ENGEVVARGG SSNKSPSIKR TRLNPLYSLE  60
DHLSPLKESD MSSSYQSNAQ DSCHSSQNKN SCKLNEELEN LLRPAKDSKP VTPGHALLQQ  120
CSSSSPLKKQ RTHSTQTPPT PPNTRNMGFH QTTAKVNFSN FSIPAVFLKS STCHGSSTTQ  180
QTKNYSYPAR VEEIERSEKP PPPLDEHSEA IGLGIHRHQA QQALRAKEKA YNINNTICKE  240
PFLASSVCSL GASNDPNVGI RKDEDTDDSN YLSDNDEEPE NMVKQDREGN RLKRTRNAEV  300
HNLSEKKRRE KINKKMRTLK ELIPNCNKVD KASMLDDAIE YLKTLKLQLQ IMSMGSGLWP  360
LMMLPAAAAP HMNGPHLSQL VGAGMGFRPP ELPLPPLSAI TDTRLHQMFG FPNQIPTMPM  420
PHAPFFPVTG NSPTQPHLAA TTAPTQHLAK SAASLQVSLP TNLDPLENAT NQLQNPVSFH  480
PHGISTPFIF PQK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1305310KKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi03g06970.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014495555.10.0transcription factor PIF3
TrEMBLA0A1S3TP330.0A0A1S3TP33_VIGRR; transcription factor PIF3
STRINGXP_007163252.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133291829
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.26e-30phytochrome interacting factor 3