PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vradi03g05810.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 503aa MW: 55247.8 Da PI: 8.5344 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.2 | 1.4e-05 | 62 | 84 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Vradi03g05810.1 62 FVCEICNKGFQRDQNLQLHRRGH 84 89*******************88 PP | |||||||
2 | zf-C2H2 | 16.2 | 2.9e-05 | 138 | 160 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H++t+ Vradi03g05810.1 138 WKCDKCSKRYAVQSDWKAHQKTC 160 58*******************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.5E-8 | 61 | 84 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.7E-5 | 61 | 84 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.949 | 62 | 84 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.017 | 62 | 84 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12171 | 8.0E-5 | 62 | 84 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE pattern | PS00028 | 0 | 64 | 84 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 67 | 103 | 133 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 8.2E-6 | 126 | 159 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 3.5E-8 | 133 | 159 | No hit | No description |
SMART | SM00355 | 89 | 138 | 158 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 503 aa Download sequence Send to blast |
MAKKFLIRIL CIPLLFVKCF ICSVFRSSMV SYYLLMDMFY EIDPSAEVVA LSPTTLMATN 60 RFVCEICNKG FQRDQNLQLH RRGHNLPWKL RQRTSTEVKK RVYVCPEPSC VHHNPGRALG 120 DLTGIKKHYS RKHGEKKWKC DKCSKRYAVQ SDWKAHQKTC GTREYKCDCG TIFSRRDSFI 180 THRAFCDALT EENNRVNQGL TSGMPPNLQN QIPDLMSTMP LNTSPNTAYD PKNPLKSLPQ 240 ELVPIPFKSM SMGGGMFSTN AGALFGGPKS MSPSSSSLQL GSNTSSSFNY LQDNKNGGLI 300 AASAQMSATA LLQKAAQMGA TASNTINSPM MQKGFVSSTA APDHVSSTRP PYSGAMLQHN 360 NSYDHFSPQP DLSNMAGVSG GGAFINQLFH KGQEISQVFD TNTAVSAMND VGMFSQMPLG 420 SDHNPGLMKN VEQEASNCSG LIHGKDVVEG NPMQASRFGG SDMTTVHDFL GIGGSTSRVM 480 NHFHHHFPHE DSSAMEEPIW DV* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 1e-35 | 134 | 197 | 3 | 66 | Zinc finger protein JACKDAW |
5b3h_F | 1e-35 | 134 | 197 | 3 | 66 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vradi03g05810.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017418855.1 | 0.0 | PREDICTED: protein indeterminate-domain 2-like | ||||
Swissprot | Q9SCQ6 | 1e-105 | IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1 | ||||
TrEMBL | A0A0L9UAE7 | 0.0 | A0A0L9UAE7_PHAAN; Uncharacterized protein | ||||
STRING | XP_007163083.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2192 | 30 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G50700.1 | 1e-103 | indeterminate(ID)-domain 2 |
Publications ? help Back to Top | |||
---|---|---|---|
|