PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi03g05800.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

HB-other

Protein Properties

Length: 943aa MW: 104328 Da PI: 9.3859

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi03g05800.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	17.4	7.5e-06	69	125	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ +++ F + +s++e +e+++ g+t +qV+ +F +R + ++ Vradi03g05800.1 69 KRPRDLLNPKAVNYMQSIFSIKDSISKKELREISALFGVTATQVRDFFTGQRSRVRR 125 799**************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.4E-5	65	120	IPR009057	Homeodomain-like
PROSITE profile	PS50071	9.766	66	126	IPR001356	Homeobox domain
SMART	SM00389	3.9E-4	68	130	IPR001356	Homeobox domain
CDD	cd00086	1.26E-4	69	125	No hit	No description
SuperFamily	SSF46689	2.78E-6	69	130	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.20.930.10	2.8E-5	226	310	IPR017923	Transcription factor IIS, N-terminal
SuperFamily	SSF47676	4.45E-5	230	309	IPR017923	Transcription factor IIS, N-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0009911	Biological Process	positive regulation of flower development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 943 aa Download sequence Send to blast
MDAWNEDFAE QEIGNSAESF QKFLLSQRDL FHSQIDQFQE IVVTQCKLTG VNPLSQEMAA 60 GALSIKIGKR PRDLLNPKAV NYMQSIFSIK DSISKKELRE ISALFGVTAT QVRDFFTGQR 120 SRVRRLVQLS KERALGSNSC EDPHDDKIIP DPVRLSNPAS VNSTIPSSAE EASCTTQDAT 180 LPDLDDSDKH FVDNIFSLMQ QEETFSGQEK LMEWILTIQN FSVLLWFLSR GGGITLATWL 240 SKATAEEQTS VLLLILKVLC HLPLHKAIPM HISAILQSVN KLRFYRTSDI SNRARILLSK 300 WSKLLARNQV IKKPNGVRPS SDGHKELISQ RQACILFSMN NFIGQFVGSE SWHSNIDVPE 360 DFLSLSTESL DNFRKLGSPQ AAKLLPPSLD DSNKKSTFGV SSSRILVFVT SLLTESRERR 420 KVQLVEQPGQ KSVSRSSQVT RAGSVSQGRP MSADDIQKAK MRALFMQNKY GKSGSKESKE 480 TKIDSLNKQP QTIPASIAAC SSKVPTPKID ENKKPLLLAS KTSNRLEAYS KPKVDVKEPL 540 WEKCMRIQTP WKTPAEVELK DSWSVGGGGN SKEVDVQRNR ERREKETIYK TIQEIPPNPK 600 EPWDIEMDYD DTLTLEIPIE QLPDGDGADI AVSPNQVVAH TVEGVASTSS TSVAPAEPDL 660 ELLAVLLKNP ELVFALTSGQ AGSIPGEDVV KLLDMIKRGG ANLGLSENTN GSYGTSVKAP 720 DKVEVSLPSP TPLSDPRTVL AWHQINSLYE QIANLGKTGF PTSLGVVLLA FRVANCNGWS 780 SEASKNPFSR RSVASDRIIQ NHAAVTTTNL LTQIPMTSTT ALRQQPAVVV SSSRHLSNTT 840 VSPYSLHQAT NVNPEKQQPL GHVQIPSSNV GLTMKKNLIT TNAPSVNYSG THSAVAMRGR 900 NYPDSRVNHG RNHRPEWSRQ RGSSEHWDPD RQGNRKWHDQ RR*

Sequence ? help Back to Top

Protein Sequence Length: 943 aa Download sequence Send to blast

MDAWNEDFAE QEIGNSAESF QKFLLSQRDL FHSQIDQFQE IVVTQCKLTG VNPLSQEMAA  60
GALSIKIGKR PRDLLNPKAV NYMQSIFSIK DSISKKELRE ISALFGVTAT QVRDFFTGQR  120
SRVRRLVQLS KERALGSNSC EDPHDDKIIP DPVRLSNPAS VNSTIPSSAE EASCTTQDAT  180
LPDLDDSDKH FVDNIFSLMQ QEETFSGQEK LMEWILTIQN FSVLLWFLSR GGGITLATWL  240
SKATAEEQTS VLLLILKVLC HLPLHKAIPM HISAILQSVN KLRFYRTSDI SNRARILLSK  300
WSKLLARNQV IKKPNGVRPS SDGHKELISQ RQACILFSMN NFIGQFVGSE SWHSNIDVPE  360
DFLSLSTESL DNFRKLGSPQ AAKLLPPSLD DSNKKSTFGV SSSRILVFVT SLLTESRERR  420
KVQLVEQPGQ KSVSRSSQVT RAGSVSQGRP MSADDIQKAK MRALFMQNKY GKSGSKESKE  480
TKIDSLNKQP QTIPASIAAC SSKVPTPKID ENKKPLLLAS KTSNRLEAYS KPKVDVKEPL  540
WEKCMRIQTP WKTPAEVELK DSWSVGGGGN SKEVDVQRNR ERREKETIYK TIQEIPPNPK  600
EPWDIEMDYD DTLTLEIPIE QLPDGDGADI AVSPNQVVAH TVEGVASTSS TSVAPAEPDL  660
ELLAVLLKNP ELVFALTSGQ AGSIPGEDVV KLLDMIKRGG ANLGLSENTN GSYGTSVKAP  720
DKVEVSLPSP TPLSDPRTVL AWHQINSLYE QIANLGKTGF PTSLGVVLLA FRVANCNGWS  780
SEASKNPFSR RSVASDRIIQ NHAAVTTTNL LTQIPMTSTT ALRQQPAVVV SSSRHLSNTT  840
VSPYSLHQAT NVNPEKQQPL GHVQIPSSNV GLTMKKNLIT TNAPSVNYSG THSAVAMRGR  900
NYPDSRVNHG RNHRPEWSRQ RGSSEHWDPD RQGNRKWHDQ RR*

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269\|PubMed:10363371}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi03g05800.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	0.0	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014495914.1	0.0	homeobox protein LUMINIDEPENDENS
Swissprot	Q38796	1e-156	LUMI_ARATH; Homeobox protein LUMINIDEPENDENS
TrEMBL	A0A1S3TQ77	0.0	A0A1S3TQ77_VIGRR; homeobox protein LUMINIDEPENDENS
STRING	XP_007163082.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9809	29	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	1e-136	HB-other family protein

Publications ? help Back to Top
Chakrabortee S, et al. Luminidependens (LD) is an Arabidopsis protein with prion behavior. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(21): p. 6065-70 [PMID:27114519]