PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi03g05190.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NF-YA
Protein Properties Length: 361aa    MW: 39466.4 Da    PI: 9.9688
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi03g05190.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA97.11.9e-30155211158
        CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                      d p+YVNaKQy++I++RRq+Rak+  ++kl +k rkpy+heSRh hA+rRpRg+gGrF
  Vradi03g05190.1 155 DGPIYVNAKQYHGIIRRRQSRAKAVLHHKL-TKRRKPYMHESRHLHAMRRPRGCGGRF 211
                      57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.4E-34153214IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.737154214IPR001289Nuclear transcription factor Y subunit A
PfamPF020455.2E-27157211IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006166.0E-23157179IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006166.0E-23188211IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MAMQTVYLKE HEGNAHNSVG ALSSAASAPW WSAFGSQPVH GVESCGQMKP FSLELPNCIN  60
HHAANKPSAR GAEQVLGKGH TTQFTIFPDD AQTLQTTISL QPSLADSHSR FEIGFSQPMI  120
CAKYPYTDQF YGLFSAFAPQ ISGRIMLPLN MTSDDGPIYV NAKQYHGIIR RRQSRAKAVL  180
HHKLTKRRKP YMHESRHLHA MRRPRGCGGR FLNTRKSANG NGKTGNEVHE TVGERFHSSG  240
SQSSEFLQSE AGTLNSSKET NGSSPNISGS EVTSMYSRGG LDRFSLNHFG PSVHSLADMI  300
DGGRGMIVPP KWAAAAGNCC NLKDRPNIWS RQFIPGSSYF GNPSLAHGNF RQLILGSMYL  360
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_A2e-16155212260HAPB protein
4g92_A2e-16155212260HAPB protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1169188RRRQSRAKAVLHHKLTKRRK
2169189RRRQSRAKAVLHHKLTKRRKP
3170189RRQSRAKAVLHHKLTKRRKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi03g05190.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014494812.10.0nuclear transcription factor Y subunit A-10
RefseqXP_014494813.10.0nuclear transcription factor Y subunit A-10
RefseqXP_022635014.10.0nuclear transcription factor Y subunit A-10
RefseqXP_022635015.10.0nuclear transcription factor Y subunit A-10
TrEMBLA0A1S3TM170.0A0A1S3TM17_VIGRR; nuclear transcription factor Y subunit A-10
STRINGXP_007162983.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37943464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.22e-53nuclear factor Y, subunit A10