PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi03g04520.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | bZIP | ||||||||
Protein Properties | Length: 728aa MW: 81404.3 Da PI: 7.9797 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 43.1 | 9.4e-14 | 640 | 690 | 5 | 55 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 +r+rr++kNRe+A rsR+RK+a++ eLe + +L++eN +L++ l el+ Vradi03g04520.1 640 RRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAQLRQALAELERR 690 79*****************************************99999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF53474 | 1.83E-27 | 66 | 163 | IPR029058 | Alpha/Beta hydrolase fold |
Gene3D | G3DSA:3.40.50.1820 | 2.2E-30 | 73 | 160 | IPR029058 | Alpha/Beta hydrolase fold |
Pfam | PF12697 | 6.9E-11 | 100 | 378 | IPR000073 | Alpha/beta hydrolase fold-1 |
Gene3D | G3DSA:3.40.50.1820 | 2.2E-30 | 204 | 377 | IPR029058 | Alpha/Beta hydrolase fold |
SuperFamily | SSF53474 | 1.83E-27 | 207 | 375 | IPR029058 | Alpha/Beta hydrolase fold |
SMART | SM00338 | 8.5E-14 | 636 | 700 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.909 | 638 | 690 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.44E-10 | 640 | 690 | No hit | No description |
CDD | cd14707 | 1.40E-25 | 640 | 694 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 8.8E-14 | 640 | 692 | No hit | No description |
Pfam | PF00170 | 1.3E-11 | 640 | 692 | IPR004827 | Basic-leucine zipper domain |
PROSITE pattern | PS00036 | 0 | 643 | 658 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 728 aa Download sequence Send to blast |
MGSGVNRKLS AASTRAHSSN QNKTTSVHFP SGILRTVFAV LFIVLVAWGY QAIQPPPSKL 60 CGSPSGPPIT APRIKLRDGR NLAYKEHGVP KDDVAEDLGV YIVSFDRPGY GESDPHPSQT 120 VKSLALDIEE LADKLGLGSK FYIIGFSLGG QVVWRCLKYI PHRYDAFRFE VWEIGGVIML 180 VYDIKMSGVI VLVIPNYAIL KTLISVLAGA VLIAPVLNYW WTGLPRNLTN EVFYRQKLQD 240 QWTLGVAHYI PWLTYWWNTQ TWFPSSSLIA DSLDLLSLQD KELLPKRKDR KNHVGEVRQQ 300 GEHESVHRDL IVAFGSWEFS PLDLENPFPN KEGLVHIWQG DQDLIVPVKV QRYIAQKLPW 360 IQYHELQGAG HLFPHLDDFV LYVTLLSCGL LKEEGKEMVV EESEMNSQQD GNKNHHSQFP 420 PSSIGRQTSI YSLTLDEFQH SLCETGKNFG SMNMDEFISS VWNAEENQAI ITSSNVPLSQ 480 PFTDKDPTTL RKQPSLPRQP SLSLPPPLSR KTVDEVWSQI QKEQHDSTNN NDVLNNTESA 540 PRQPTFVSNV VAPGYQVGEA SGGYAVNGKR DGGAVFHQQG VSFGGSGYGM GPTMGMGGPV 600 SPANSSDGIG NDCGQFGLEM GGLRGRKRIG DGPVEKVVER RQRRMIKNRE SAARSRARKQ 660 AYTVELEAEL NQLKEENAQL RQALAELERR RKQQIFEELS NISVQANAQK VKEKDKLRAL 720 RRYMSYP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi03g04520.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014494919.1 | 0.0 | uncharacterized protein LOC106756833 isoform X1 | ||||
Refseq | XP_022634989.1 | 0.0 | uncharacterized protein LOC106756833 isoform X1 | ||||
TrEMBL | A0A1S3TMB8 | 0.0 | A0A1S3TMB8_VIGRR; uncharacterized protein LOC106756833 isoform X1 | ||||
STRING | GLYMA03G35260.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF351 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36270.1 | 9e-34 | bZIP family protein |