PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi03g04330.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 235aa    MW: 25133.8 Da    PI: 5.5611
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi03g04330.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.7e-1866116155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      + y+GVr+++ +g+Wv+eIr+p+    +  r++lg+f t+e+Aa a++ a+++l+g
  Vradi03g04330.1  66 PVYRGVRRRS-SGKWVSEIREPR----KpNRIWLGTFATPEMAAIAYDVAALALKG 116
                      68*****888.8*********94....478***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.9E-1166116IPR001471AP2/ERF domain
PROSITE profilePS5103222.47167124IPR001471AP2/ERF domain
SMARTSM003806.3E-3367130IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-2167126IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.5E-3067126IPR001471AP2/ERF domain
CDDcd000181.33E-3068126No hitNo description
PRINTSPR003675.5E-116879IPR001471AP2/ERF domain
PRINTSPR003675.5E-11106126IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MVNSFSSHSN SNHNKWLPST VNCHHPTSST FTSDIPYNIT TMRSTNSTTC AASSTGASNG  60
NTGRHPVYRG VRRRSSGKWV SEIREPRKPN RIWLGTFATP EMAAIAYDVA ALALKGKDAE  120
LNFPDSASSL PVPASSAARD IQMAAASAAA AVGAANDALS EGSRGGNVSV SMAQEEFSGG  180
SLNHFVDEDL IFDMPNILVN MAEGMLLSPP RFDNFSATDY DYMDENPNLW GFPY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-15651241272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi03g04330.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014495657.11e-140ethylene-responsive transcription factor ERF024
SwissprotQ9SJR04e-57ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLA0A1S3TPK61e-138A0A1S3TPK6_VIGRR; ethylene-responsive transcription factor ERF024
STRINGXP_007162859.11e-115(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56232144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.18e-38ERF family protein