PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi03g04320.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family Trihelix
Protein Properties Length: 591aa    MW: 67773.8 Da    PI: 6.7479
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi03g04320.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix94.69.5e-30136221187
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                      rW++qe+l+L+e+r++++++++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r  ++ +++++f+qlea
  Vradi03g04320.1 136 RWPRQETLTLLEIRSRLDSKFKEANQKGPLWDEVSRIMsEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 221
                      8*************************************999*****************************98..55667*******85 PP
2trihelix51.82.1e-16436518284
         trihelix   2 WtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                      W+++e+  L ++r eme+r+ + g++++  Wee++ km+  g+ers+   kekwe+ +++ ++ k+g+kkr +e+s+ c yfd+
  Vradi03g04320.1 436 WPESEITRLQQLRAEMETRYMQsGCSEEFMWEEIATKMACFGYERSALVFKEKWESTSNYARNAKDGNKKR-KEDSRGCFYFDN 518
                      *******************98648**********************************************8.88899*****86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.131129194IPR017877Myb-like domain
CDDcd122036.66E-20136201No hitNo description
PfamPF138371.6E-20136222No hitNo description
PROSITE profilePS500905.459428493IPR017877Myb-like domain
PfamPF138374.3E-9434518No hitNo description
CDDcd122031.00E-14436500No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0010200Biological Processresponse to chitin
GO:0046621Biological Processnegative regulation of organ growth
GO:0048442Biological Processsepal development
GO:0048498Biological Processestablishment of petal orientation
GO:0090428Biological Processperianth development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 591 aa     Download sequence    Send to blast
MEMEDHHHHH QHHHHQHHEQ QQQQYAITDL RQLMNGPRST HFPSMPPQPK AELFPGGHPN  60
LAASQHFEMM MFGRQVADIM PRCLHDFAST DSGTNNNNTS IAAATPTTTT SASTPPLSCL  120
EGETAGCIGG DASTGRWPRQ ETLTLLEIRS RLDSKFKEAN QKGPLWDEVS RIMSEEHGYQ  180
RSGKKCREKF ENLYKYYKKT KEGKAGRQDG KHYRFFRQLE ALYGENSNQT SVPETNFGSG  240
SLRFHSNSHN PSQTNQEMFH SQKHCDSLSL TNTTDLDTSS SDDNDQNSTG GLKDNDSTEK  300
RRKRLGGRSW KVKIKDFIDS QMRKLVEKQE EWLDKLTKTL EQKEKERVLR EEEWRRQEAV  360
RLEREHKFWA KERAWIEARD AALMEALQKL TGNEMIKSTQ SPEGVMVTGI QNHNENLNED  420
GSEILNSTTA RAAESWPESE ITRLQQLRAE METRYMQSGC SEEFMWEEIA TKMACFGYER  480
SALVFKEKWE STSNYARNAK DGNKKRKEDS RGCFYFDNSE QSSLYNQGGA YCDINDQRHE  540
RRLQNDGSSP SNSNVGNAVA GDHCFPFLMT ESANLWENYS LKVSKASQNQ *
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi03g04320.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014494799.10.0trihelix transcription factor PTL
TrEMBLA0A1S3TM030.0A0A1S3TM03_VIGRR; trihelix transcription factor PTL
STRINGXP_007162858.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20223489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.11e-130Trihelix family protein