PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi03g04130.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 235aa MW: 27134.8 Da PI: 8.7155 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.3 | 3.1e-19 | 71 | 125 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ ++t++qle+Le+ F+++ +++ e++ +L+++lgL+ rq+ vWFqNrR+++k Vradi03g04130.1 71 EKKKRLTSNQLEILERSFQEEIKLDPEKKMKLSRELGLQPRQIAVWFQNRRTRWK 125 57788*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 117.4 | 8.3e-38 | 71 | 162 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekk+rl+++q+++LE+sF+ee kL+pe+K++l+reLglqprq+avWFqnrR R+ktkqlE+ y+aLk++yd +++e+++L++ev +L++ l+ Vradi03g04130.1 71 EKKKRLTSNQLEILERSFQEEIKLDPEKKMKLSRELGLQPRQIAVWFQNRRTRWKTKQLEHLYDALKHQYDVISNEKQKLQEEVVKLKAMLS 162 69**************************************************************************************8876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.46E-19 | 61 | 129 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.896 | 67 | 127 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.6E-18 | 69 | 131 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.85E-16 | 70 | 128 | No hit | No description |
Pfam | PF00046 | 1.1E-16 | 71 | 125 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-20 | 73 | 134 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 102 | 125 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 5.4E-9 | 127 | 161 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0010434 | Biological Process | bract formation | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MEFNGKRDLA LKLYKDMDWH YTTKPFLPHP DTLSFFYNYN NNPCPGVEVK QATLLERGEG 60 SIPAMYNGSK EKKKRLTSNQ LEILERSFQE EIKLDPEKKM KLSRELGLQP RQIAVWFQNR 120 RTRWKTKQLE HLYDALKHQY DVISNEKQKL QEEVVKLKAM LSKEQGFGKQ RLGGYPEISG 180 VETVESTSEG LRGSNKAQGK SNIEQVADEG FCSFSVEDYN TVSVPFCQWP VVPY* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 119 | 127 | RRTRWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00486 | DAP | Transfer from AT5G03790 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi03g04130.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 1e-167 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014495698.2 | 1e-176 | homeobox-leucine zipper protein ATHB-22-like | ||||
Swissprot | Q9LZR0 | 2e-43 | ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51 | ||||
TrEMBL | A0A1S3TPH5 | 1e-174 | A0A1S3TPH5_VIGRR; homeobox-leucine zipper protein ATHB-22-like | ||||
STRING | XP_007162834.1 | 1e-138 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3394 | 34 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03790.1 | 1e-45 | homeobox 51 |
Publications ? help Back to Top | |||
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