PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi03g04100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | Trihelix | ||||||||
Protein Properties | Length: 226aa MW: 25540 Da PI: 9.2277 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 77.6 | 1.9e-24 | 104 | 202 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpy 81 +Wt+ +v++Li a+ +++++ +++ +kk++W++vs+ m+e+g+ +sp+qC++k+++lnkryk+++++ +k+ +++++++ + Vradi03g04100.1 104 KWTDTMVRLLIMAVYYIGDEAGSEGadptkkkatgllQKKGKWKSVSRGMMEKGYYVSPQQCEDKFNDLNKRYKRVNDILGKGtACRVVENQTL 197 7**************9999888643366777899999**********************************************5599****999 PP trihelix 82 fdqle 86 +d ++ Vradi03g04100.1 198 LDTMD 202 99997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 9.8E-22 | 102 | 193 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010629 | Biological Process | negative regulation of gene expression | ||||
GO:1900037 | Biological Process | regulation of cellular response to hypoxia | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MEPNALGGGI FPNISSGLIG VENLQNQQNP PHPLHHPQMV SYASHHDTDT HQQHPPQSIK 60 HGYNYSAGKT NKLQITLSDE DEPGFTAEDS GDPKRKMSPW HRMKWTDTMV RLLIMAVYYI 120 GDEAGSEGAD PTKKKATGLL QKKGKWKSVS RGMMEKGYYV SPQQCEDKFN DLNKRYKRVN 180 DILGKGTACR VVENQTLLDT MDLSPKMKEE VRKLLNSKHL FFREM* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi03g04100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014495639.1 | 1e-170 | uncharacterized protein LOC106757480 | ||||
TrEMBL | A0A1S3TPF9 | 1e-169 | A0A1S3TPF9_VIGRR; uncharacterized protein LOC106757480 | ||||
STRING | XP_007162836.1 | 1e-165 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4820 | 34 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10040.1 | 4e-64 | sequence-specific DNA binding transcription factors |