PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi03g04080.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

HD-ZIP

Protein Properties

Length: 196aa MW: 22958.3 Da PI: 8.5836

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi03g04080.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.6	1e-18	7	61	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ ++t++qle Le+ F+++ +++ e++ +L+++lgL+ rq+ vWFqNrR+++k Vradi03g04080.1 7 EKKKRLTSNQLELLERSFQEEIKLDPERKMKLSRELGLQPRQIAVWFQNRRTRWK 61 57788*************************************************9 PP
2	HD-ZIP_I/II	113.5	1.4e-36	7	92	1	86
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 ekk+rl+++q++lLE+sF+ee kL+perK++l+reLglqprq+avWFqnrR R+ktkqlE+ y++Lk++yd +++e+++L++e++e Vradi03g04080.1 7 EKKKRLTSNQLELLERSFQEEIKLDPERKMKLSRELGLQPRQIAVWFQNRRTRWKTKQLEHLYDVLKHQYDVISNEKQMLQEETKE 92 69********************************************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	6.42E-19	3	73	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.929	3	63	IPR001356	Homeobox domain
SMART	SM00389	1.4E-17	5	67	IPR001356	Homeobox domain
CDD	cd00086	3.11E-15	6	64	No hit	No description
Pfam	PF00046	3.9E-16	7	61	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.0E-20	9	70	IPR009057	Homeodomain-like
PRINTS	PR00031	6.1E-5	34	43	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	38	61	IPR017970	Homeobox, conserved site
PRINTS	PR00031	6.1E-5	43	59	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MYNGSKEKKK RLTSNQLELL ERSFQEEIKL DPERKMKLSR ELGLQPRQIA VWFQNRRTRW 60 KTKQLEHLYD VLKHQYDVIS NEKQMLQEET KEACLVQQKY EKKLQIMFCF WLVQVVKLKA 120 MLSKEEGFGK QRLGGYEEIS GIETVESTSE GLRGSNKAQG KSNIEQVADE GFCSFSVEDY 180 NTVSVPFCQW PVMPY*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	55	63	RRTRWKTKQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi03g04080.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	1e-133	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014495697.1	1e-116	homeobox-leucine zipper protein ATHB-22
TrEMBL	A0A1S3TPP5	1e-115	A0A1S3TPP5_VIGRR; homeobox-leucine zipper protein ATHB-22
STRING	XP_007162834.1	9e-98	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3394	34	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03790.1	1e-42	homeobox 51