PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi03g03400.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | NAC | ||||||||
Protein Properties | Length: 329aa MW: 37400.2 Da PI: 7.8692 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 134.5 | 7.3e-42 | 42 | 155 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhP+deel+v+yL++kv++++l+ ++i+e+d+yk++Pw+L+ + d+ky++g r+nra++sgyWkatg+d+++++ Vradi03g03400.1 42 LPPGFRFHPSDEELIVHYLRNKVTSSPLPG-SFIAEIDLYKYNPWELQ--------------SLDRKYPNGVRPNRAAASGYWKATGTDRPIFT 120 79***************************9.89**************7..............4689***************************9 PP NAM 95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + + +++g+kk Lvfykgrapkg+ktdW+mheyrl Vradi03g03400.1 121 ScGMKNIGVKKALVFYKGRAPKGSKTDWIMHEYRL 155 977888***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-52 | 38 | 181 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 48.296 | 42 | 181 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-22 | 43 | 155 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MLAIQHGTNA LLSKSLTPIY LFLQRRYIFI FMDKDGNSEI RLPPGFRFHP SDEELIVHYL 60 RNKVTSSPLP GSFIAEIDLY KYNPWELQSL DRKYPNGVRP NRAAASGYWK ATGTDRPIFT 120 SCGMKNIGVK KALVFYKGRA PKGSKTDWIM HEYRLHNSMN SISQQRSMRL DEWVLCRVRQ 180 KTSNTRNNWE ECIYEATSQF EEMNENSNPE AAKNSVHDEY PLLPYILASV SDSIGLASSS 240 GCGCNDDASL HDKNSNVMIG GEFMAAEGLF NPLKRKNSKE KELELYASLN KKLSEEHDDL 300 NKDCNSNNFD HSGLPSYYPK SLISSLYH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-54 | 33 | 191 | 6 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi03g03400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 1e-170 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017416921.1 | 0.0 | PREDICTED: NAC transcription factor 25-like | ||||
TrEMBL | A0A0S3RYN7 | 0.0 | A0A0S3RYN7_PHAAN; Uncharacterized protein | ||||
STRING | GLYMA19G36421.1 | 1e-144 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2416 | 29 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61110.1 | 1e-66 | NAC domain containing protein 25 |