PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi03g02990.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C2H2 | ||||||||
Protein Properties | Length: 283aa MW: 31412.2 Da PI: 10.1232 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.2 | 0.0011 | 44 | 66 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+++Fs+ L H +H Vradi03g02990.1 44 FECKTCNRRFSSFQALGGHRASH 66 89**********99999998887 PP | |||||||
2 | zf-C2H2 | 13.6 | 0.0002 | 92 | 114 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg+ Fs L H+r+H Vradi03g02990.1 92 HECSICGQEFSLGQALGGHMRKH 114 78********************9 PP | |||||||
3 | zf-C2H2 | 13.6 | 0.0002 | 203 | 225 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg+ Fs L H+r+H Vradi03g02990.1 203 HECTICGQEFSLGQALGGHMRRH 225 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.16 | 44 | 66 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 1.88E-8 | 44 | 114 | No hit | No description |
PROSITE profile | PS50157 | 10.72 | 44 | 71 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.2E-11 | 44 | 68 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 46 | 66 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 3.1E-4 | 90 | 116 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.492 | 92 | 119 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.067 | 92 | 114 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 2.8E-9 | 92 | 116 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 94 | 114 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.43 | 154 | 176 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.097 | 154 | 181 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 5.5E-10 | 154 | 178 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.71E-7 | 154 | 225 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 156 | 176 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.085 | 203 | 225 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.785 | 203 | 225 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.4E-9 | 203 | 227 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 205 | 225 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence Send to blast |
MVAMKRQRGN EGSENLDLAK CLMLFSCPEE SNKAQEKGFG SLEFECKTCN RRFSSFQALG 60 GHRASHKRQK VEGEELKEQG KSLSLWSKPK MHECSICGQE FSLGQALGGH MRKHRGISNE 120 GFVPIPSIDQ VIAKFPVLKR SNSTRRKHVE DVEFECKTCK RKFSSFQALG GHRASHKRSK 180 LEGDELKAQP IGLSLGIKKP KMHECTICGQ EFSLGQALGG HMRRHRASIN GDFSSVKYVA 240 QVPILKRSNS TRGMCMDLNL TPLENDFNLL FGKTSLNAGA LV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi03g02990.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014495226.1 | 1e-101 | zinc finger protein ZAT11 | ||||
Swissprot | Q9SLD4 | 3e-35 | ZAT11_ARATH; Zinc finger protein ZAT11 | ||||
TrEMBL | A0A1S3TN80 | 1e-100 | A0A1S3TN80_VIGRR; zinc finger protein ZAT11 | ||||
STRING | XP_007162678.1 | 3e-93 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF316 | 34 | 175 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37430.1 | 1e-37 | C2H2 family protein |