PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi03g02990.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 283aa    MW: 31412.2 Da    PI: 10.1232
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi03g02990.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.00114466123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C+ C+++Fs+   L  H  +H
  Vradi03g02990.1 44 FECKTCNRRFSSFQALGGHRASH 66
                     89**********99999998887 PP

2zf-C2H213.60.000292114123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++Cg+ Fs    L  H+r+H
  Vradi03g02990.1  92 HECSICGQEFSLGQALGGHMRKH 114
                      78********************9 PP

3zf-C2H213.60.0002203225123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++Cg+ Fs    L  H+r+H
  Vradi03g02990.1 203 HECTICGQEFSLGQALGGHMRRH 225
                      78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.164466IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.88E-844114No hitNo description
PROSITE profilePS5015710.724471IPR007087Zinc finger, C2H2
PfamPF139122.2E-114468IPR007087Zinc finger, C2H2
PROSITE patternPS0002804666IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.1E-490116IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.49292119IPR007087Zinc finger, C2H2
SMARTSM003550.06792114IPR015880Zinc finger, C2H2-like
PfamPF139122.8E-992116IPR007087Zinc finger, C2H2
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
SMARTSM003550.43154176IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.097154181IPR007087Zinc finger, C2H2
PfamPF139125.5E-10154178IPR007087Zinc finger, C2H2
SuperFamilySSF576671.71E-7154225No hitNo description
PROSITE patternPS000280156176IPR007087Zinc finger, C2H2
SMARTSM003550.085203225IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.785203225IPR007087Zinc finger, C2H2
PfamPF139122.4E-9203227IPR007087Zinc finger, C2H2
PROSITE patternPS000280205225IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MVAMKRQRGN EGSENLDLAK CLMLFSCPEE SNKAQEKGFG SLEFECKTCN RRFSSFQALG  60
GHRASHKRQK VEGEELKEQG KSLSLWSKPK MHECSICGQE FSLGQALGGH MRKHRGISNE  120
GFVPIPSIDQ VIAKFPVLKR SNSTRRKHVE DVEFECKTCK RKFSSFQALG GHRASHKRSK  180
LEGDELKAQP IGLSLGIKKP KMHECTICGQ EFSLGQALGG HMRRHRASIN GDFSSVKYVA  240
QVPILKRSNS TRGMCMDLNL TPLENDFNLL FGKTSLNAGA LV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi03g02990.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014495226.11e-101zinc finger protein ZAT11
SwissprotQ9SLD43e-35ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLA0A1S3TN801e-100A0A1S3TN80_VIGRR; zinc finger protein ZAT11
STRINGXP_007162678.13e-93(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.11e-37C2H2 family protein