PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi03g02270.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 291aa    MW: 31917.2 Da    PI: 7.5453
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi03g02270.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.0007226248223
                      EETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                      +Cp Cg  Fs+  +L+ H +  H
  Vradi03g02270.1 226 SCPQCGVKFSSAISLVDHVQQvH 248
                      6*****************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183105.49E-13652No hitNo description
Gene3DG3DSA:4.10.1110.104.1E-101053IPR000058Zinc finger, AN1-type
PROSITE profilePS510397.5891059IPR000058Zinc finger, AN1-type
PfamPF014283.5E-131351IPR000058Zinc finger, AN1-type
SMARTSM001540.00321352IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.101.5E-991146IPR000058Zinc finger, AN1-type
SuperFamilySSF1183107.32E-893144No hitNo description
PROSITE profilePS510397.64798147IPR000058Zinc finger, AN1-type
PfamPF014289.0E-8101141IPR000058Zinc finger, AN1-type
SMARTSM001540.06101142IPR000058Zinc finger, AN1-type
SMARTSM003550.019225248IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.328225253IPR007087Zinc finger, C2H2
PROSITE patternPS000280227248IPR007087Zinc finger, C2H2
SMARTSM003559.8261284IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280263284IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MGTPEFPNLG KHCSVSDCRQ LDFLPFTCDR CDQIYCLEHR GYIEHKCTKP NKEDVKVVIC  60
PLCAKGVRLI PDQDPNIAWD HHVNIDCDPS NYEKVTKKRK CPAPGCREVL VFSNTIKCRD  120
CLEDHCLKHR FGPDHKCSGP KKLETSFSFM SLFNTIKKEE PKPNLTSTAS SKWTSSFLSV  180
ASNIRASAEA SMSKLGNEIN QVWLAARDSV GPNSGSGNKN DLQEESCPQC GVKFSSAISL  240
VDHVQQVHES NGKPLGVKKI EACPKCSGGF VEPVSLVEHV ERDHGGGSGA *
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi03g02270.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, dehydration and salt stress. {ECO:0000269|PubMed:17033811}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014495598.10.0zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
SwissprotQ0D5B91e-109SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBLA0A1S3TP770.0A0A1S3TP77_VIGRR; zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
STRINGXP_007162230.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58643351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-109C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]