PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi03g02100.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 350aa    MW: 39461.8 Da    PI: 6.8106
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi03g02100.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.0001271293123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      + C +Cgk F  + + ++H +++
  Vradi03g02100.1 271 FMCRKCGKAFAVRGDWRTHEKNC 293
                      89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.1E-6187206IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.64187214IPR007087Zinc finger, C2H2
SMARTSM003550.58187209IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280189209IPR007087Zinc finger, C2H2
SuperFamilySSF576671.29E-6252291No hitNo description
Gene3DG3DSA:3.30.160.609.2E-6258291IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.808271291IPR007087Zinc finger, C2H2
SMARTSM0035549271291IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MADPYSNFFS SSSFFRFNHH FPSSNPSPHA PYVHHNFINH SKTTDTTFFH YHHHHNHTSS  60
TTATFSSFPP SPPLREELPL LRLSPAKQEE EEEDLSCTGP MDVEERMHIH PKEEEDDEDG  120
TVTVALHIGL PSPSAAEMAS VLSSSSETTD KDHGDGAAED SSAGFRLNKG QYWIPTPSQI  180
LIGPTQFSCP VCCKTFNRYN NMQMHMWGHG SQYRKGPESL RGTQPTGMLR LPCYCCAPGC  240
RNNIDHPRSK PLKDFRTLQT HYKRKHGIKP FMCRKCGKAF AVRGDWRTHE KNCGKLWYCI  300
CGSDFKHKRS LKDHIKAFGS GHAAYGIDGF EEEDEPASEV EQDNDDSTQ*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi03g02100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014495337.10.0zinc finger protein WIP2
RefseqXP_017417347.10.0PREDICTED: zinc finger protein WIP2-like
SwissprotQ9SVY11e-143ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A0L9U7L30.0A0A0L9U7L3_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RXH10.0A0A0S3RXH1_PHAAN; Uncharacterized protein
TrEMBLA0A1S3TNP20.0A0A1S3TNP2_VIGRR; zinc finger protein WIP2
STRINGXP_007162251.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-140C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]