PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi03g01690.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NAC
Protein Properties Length: 282aa    MW: 32486.3 Da    PI: 6.2301
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi03g01690.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.91.2e-50101381129
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrF P+deelv++yL kk++++++    ++ e+d++ +ePw+Lp+ +k + +ewyfFs rd+kyatg r+nrat+sgyWkatgkd++v++
  Vradi03g01690.1  10 LPPGFRFYPSDEELVCHYLYKKIANEEVLK-GTLVEIDLHICEPWQLPEVAKLNANEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRTVVD 102
                      79*************************655.78***************88888999************************************** PP

              NAM  95 k.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                        ++e+vg++ktLvfy++rap+g kt W+mhe+rle
  Vradi03g01690.1 103 PtTQEVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLE 138
                      977888***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.06E-618156IPR003441NAC domain
PROSITE profilePS5100557.56810156IPR003441NAC domain
PfamPF023657.3E-2811137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MGLRDIGASL PPGFRFYPSD EELVCHYLYK KIANEEVLKG TLVEIDLHIC EPWQLPEVAK  60
LNANEWYFFS FRDRKYATGF RTNRATTSGY WKATGKDRTV VDPTTQEVVG MRKTLVFYRN  120
RAPNGIKTGW IMHEFRLETP HMPPKEDWVL CRVFHKSKED NNSSKLMYDY DTTMASSSPT  180
MNRFSTSFPS SMPLPSNHHH HHHFNTNQNS SFMDLLHFSR DTNTNNTIVT QITSKGDDGY  240
GFLWDMDLEE NSLQDAVASN LDAITFEVDN NNNSENNMVF L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-48915716166NO APICAL MERISTEM PROTEIN
1ut4_B2e-48915716166NO APICAL MERISTEM PROTEIN
1ut7_A2e-48915716166NO APICAL MERISTEM PROTEIN
1ut7_B2e-48915716166NO APICAL MERISTEM PROTEIN
3swm_A2e-48915719169NAC domain-containing protein 19
3swm_B2e-48915719169NAC domain-containing protein 19
3swm_C2e-48915719169NAC domain-containing protein 19
3swm_D2e-48915719169NAC domain-containing protein 19
3swp_A2e-48915719169NAC domain-containing protein 19
3swp_B2e-48915719169NAC domain-containing protein 19
3swp_C2e-48915719169NAC domain-containing protein 19
3swp_D2e-48915719169NAC domain-containing protein 19
4dul_A2e-48915716166NAC domain-containing protein 19
4dul_B2e-48915716166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi03g01690.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0893651e-172BT089365.1 Soybean clone JCVI-FLGm-1D22 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014495173.10.0protein CUP-SHAPED COTYLEDON 3
SwissprotQ84TE65e-64NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A1S3TN370.0A0A1S3TN37_VIGRR; protein CUP-SHAPED COTYLEDON 3
STRINGXP_007162552.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43813359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.15e-95NAC domain containing protein 74
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]