PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi03g01550.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 104aa    MW: 11614.8 Da    PI: 4.704
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi03g01550.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.89.8e-1220502756
              AP2 27 kr.krfslgkfgtaeeAakaaiaarkklege 56
                     ++ +r++lg+f taeeAa+a+++a+ +++g+
  Vradi03g01550.1 20 RNgARVWLGTFNTAEEAARAYDRAAFEMRGA 50
                     3459*************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103214.328157IPR001471AP2/ERF domain
SMARTSM003802.5E-131363IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-141659IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.4E-191858IPR001471AP2/ERF domain
PfamPF008472.0E-82149IPR001471AP2/ERF domain
CDDcd000183.73E-192158No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    Send to blast
MFELISTSNN ENPEGTDSAR NGARVWLGTF NTAEEAARAY DRAAFEMRGA MAILNFPHEH  60
PPFTSSSKTE HAKQVVVFEC LDDKLLEELL DCDHKNMNHN FAN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-18178532114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi03g01550.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-132AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022634679.12e-60ethylene-responsive transcription factor ERF095-like
SwissprotQ9LTC55e-25ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A3Q0EW774e-59A0A3Q0EW77_VIGRR; ethylene-responsive transcription factor ERF095-like
STRINGGLYMA03G31912.17e-35(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23220.14e-13ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]