PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi03g01440.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 211aa    MW: 23138.2 Da    PI: 8.3336
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi03g01440.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000133254123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y C+ C++ F++   L  H+++H
  Vradi03g01440.1 32 YACSFCKREFKSAQALGGHMNVH 54
                     89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.57E-62958No hitNo description
Gene3DG3DSA:3.30.160.607.2E-43057IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.1363259IPR007087Zinc finger, C2H2
PfamPF139121.9E-63255IPR007087Zinc finger, C2H2
SMARTSM003550.00793254IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803454IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0009755Biological Processhormone-mediated signaling pathway
GO:0010093Biological Processspecification of floral organ identity
GO:0010160Biological Processformation of organ boundary
GO:0042127Biological Processregulation of cell proliferation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MEGNYLTRNT DKGDRFGFEE HSWGSSWPAR NYACSFCKRE FKSAQALGGH MNVHRRDRAR  60
LRSSLPSSSW VSECPKPNPS IMPNPTHLSP SSPSSSLSNT NLFNCAHCSP LYSPSLTVSF  120
SLTPPVSLNG DKKPTLASSQ FLTLSVPQES EEIKICKNKE IGLGVEKVQG CAIGEECKVC  180
KSSEHSIKLE LGIGFLKQPE KLDLELRLGH *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A4e-112754229superman protein
2l1o_A4e-112754229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi03g01440.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014494959.11e-154transcriptional regulator SUPERMAN-like
TrEMBLA0A1S3TMG21e-152A0A1S3TMG2_VIGRR; transcriptional regulator SUPERMAN-like
STRINGXP_007162518.11e-119(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28433171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.14e-19C2H2 family protein