PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi03g01340.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 159aa    MW: 17688.3 Da    PI: 10.4311
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi03g01340.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.64.3e-202069255
              AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     +++GVr ++ +gr++AeIrd ++    ++r +lg+f+taeeAa+a++ a++ l+g
  Vradi03g01340.1 20 HFRGVRKRP-WGRFAAEIRDpWK----KTRKWLGTFDTAEEAARAYDTAARTLRG 69
                     69*******.**********883....5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.39E-281979No hitNo description
PfamPF008471.2E-122069IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-302077IPR001471AP2/ERF domain
PROSITE profilePS5103222.5242077IPR001471AP2/ERF domain
SMARTSM003802.0E-352083IPR001471AP2/ERF domain
SuperFamilySSF541715.62E-222078IPR016177DNA-binding domain
PRINTSPR003671.8E-102132IPR001471AP2/ERF domain
PRINTSPR003671.8E-104359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MPAHAPPINK HSPPPPKEAH FRGVRKRPWG RFAAEIRDPW KKTRKWLGTF DTAEEAARAY  60
DTAARTLRGP KAKTNFTYVV APAVFAAPES QAPAHDPLAR PVEFFGLPLF FTTDADSGAP  120
VRSEYKGYKL ENIAGFVVTK EEKKKPFLFD LNQPAPLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-191776262ATERF1
3gcc_A4e-191776262ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi03g01340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014495614.11e-111ethylene-responsive transcription factor 3
TrEMBLA0A1S3TPD61e-109A0A1S3TPD6_VIGRR; ethylene-responsive transcription factor 3
STRINGXP_007162505.14e-99(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33034189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.14e-21ethylene responsive element binding factor 3