PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi03g01110.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

C2H2

Protein Properties

Length: 458aa MW: 50094.5 Da PI: 9.294

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi03g01110.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.5	2.3e-05	76	98	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Vradi03g01110.1 76 FVCEICHKGFQRDQNLQLHRRGH 98 89*******************88 PP
2	zf-C2H2	12.3	0.00051	152	174	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ Vradi03g01110.1 152 WKCEKCSKIYAVQSDWKAHSKTC 174 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	6.7E-5	75	98	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.08E-5	75	98	No hit	No description
SMART	SM00355	0.046	76	98	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.637	76	98	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	78	98	IPR007087	Zinc finger, C2H2
SMART	SM00355	170	117	147	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	2.1E-4	140	173	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.08E-5	147	172	No hit	No description
SMART	SM00355	170	152	172	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 458 aa Download sequence Send to blast
MFPTAISNST SLSEDASVSS GTKLQELGGL THALSNISPQ QQPQKIKKKR SLPGNPDPDA 60 EVIALSPKTL LATNRFVCEI CHKGFQRDQN LQLHRRGHNL PWKLKQRNSK EVKKKAYVCP 120 EPSCVHHNPS RALGDLTGIK KHYCRKHGEK KWKCEKCSKI YAVQSDWKAH SKTCGTREYR 180 CDCGTLFSRK DSFITHRAFC DALAEESARL SANQLAVAAT TTTNPFQSLF LFQTQQQNFQ 240 NHHMTSFNQW DSSQENPNPS NIATSLQIKP ESQTFHNPTL SSLLQHQEQP HPNKGMITSP 300 FGNLHVPSQA SSATTSAYMS ATALLQKAAS VGAAAMTGPG PAAVGPQTAM GHVTQLGTAS 360 QLDPLVVPDS YIRGFPGRSL KNDRLTRDFL GLTAEVNGGV DGAAVDVSTN VKDMLTFAGG 420 VEYHQPLRQH HHHALLKPQQ AFGFLETTTA PETWGNC*

Sequence ? help Back to Top

Protein Sequence Length: 458 aa Download sequence Send to blast

MFPTAISNST SLSEDASVSS GTKLQELGGL THALSNISPQ QQPQKIKKKR SLPGNPDPDA  60
EVIALSPKTL LATNRFVCEI CHKGFQRDQN LQLHRRGHNL PWKLKQRNSK EVKKKAYVCP  120
EPSCVHHNPS RALGDLTGIK KHYCRKHGEK KWKCEKCSKI YAVQSDWKAH SKTCGTREYR  180
CDCGTLFSRK DSFITHRAFC DALAEESARL SANQLAVAAT TTTNPFQSLF LFQTQQQNFQ  240
NHHMTSFNQW DSSQENPNPS NIATSLQIKP ESQTFHNPTL SSLLQHQEQP HPNKGMITSP  300
FGNLHVPSQA SSATTSAYMS ATALLQKAAS VGAAAMTGPG PAAVGPQTAM GHVTQLGTAS  360
QLDPLVVPDS YIRGFPGRSL KNDRLTRDFL GLTAEVNGGV DGAAVDVSTN VKDMLTFAGG  420
VEYHQPLRQH HHHALLKPQQ AFGFLETTTA PETWGNC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-36	148	212	3	67	Zinc finger protein JACKDAW
5b3h_F	1e-36	148	212	3	67	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi03g01110.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	0.0	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014494734.1	0.0	protein indeterminate-domain 12
Refseq	XP_014494735.1	0.0	protein indeterminate-domain 12
Swissprot	O22759	1e-131	IDD12_ARATH; Protein indeterminate-domain 12
TrEMBL	A0A1S3TLT9	0.0	A0A1S3TLT9_VIGRR; protein indeterminate-domain 12
STRING	XP_007162467.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF181	34	275

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02670.1	1e-112	indeterminate(ID)-domain 12

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]