PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi03g01100.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HSF
Protein Properties Length: 364aa    MW: 41808.6 Da    PI: 5.0191
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi03g01100.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind75.68.5e-24521372103
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+y+ +ed+++++++sws+ g sfvv+d++ f++++Lp+yFkh+nf+SF       gF+k++ ++         weF+++ F +g+++ll 
  Vradi03g01100.1  52 FLTKTYDAVEDPTTSHIVSWSRGGASFVVWDPHAFSRDLLPRYFKHNNFSSF-------GFRKIDPDR---------WEFANEGFLRGHRHLLA 129
                      9**************************************************9.......9*****999.........***************** PP

                      XXXXXXXX CS
     HSF_DNA-bind  96 kikrkkse 103
                      +i+r+k++
  Vradi03g01100.1 130 NIRRRKQH 137
                      *****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.77E-2648134IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.1E-2748134IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.1E-4748134IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.4E-115275IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.3E-2152134IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.4E-1190102IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MNYLYPVKEE YFESSPPSSS SSPKSQTGGD ESAMVFLPRP MEGLHEIGPP PFLTKTYDAV  60
EDPTTSHIVS WSRGGASFVV WDPHAFSRDL LPRYFKHNNF SSFGFRKIDP DRWEFANEGF  120
LRGHRHLLAN IRRRKQHSQP STSQQGQGHC VEVGRFGLDE EVDRLKRDKQ VLMMELVKLR  180
QQQQNTRSYL EEMEERLRGT EIKQQQMMSF LARALKNPTF IQQLLQQKEK RKELEEAMSK  240
KRRRPIEQGA SGVGESSIGR EGRNSVKVEC QVFGEYGFGV SELEVLALEM QGYGRGKREQ  300
EEEPEALESQ ERLEKELDEG FWEELFSEGF EGELDIPTSQ DPDEEEDVNV LANRFGYLGS  360
SPK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-175013418120Heat shock factor protein 1
5hdg_A2e-17501348110Heat shock factor protein 1
5hdn_A2e-17501348110Heat shock factor protein 1
5hdn_B2e-17501348110Heat shock factor protein 1
5hdn_C2e-17501348110Heat shock factor protein 1
5hdn_D2e-17501348110Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1229243KRKELEEAMSKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi03g01100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014496397.10.0heat stress transcription factor A-7a
SwissprotQ9LUH81e-119HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A1S3TRQ30.0A0A1S3TRQ3_VIGRR; heat stress transcription factor A-7a
STRINGXP_007162466.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-100heat shock transcription factor A6B