PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi03g00740.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 572aa    MW: 64161.7 Da    PI: 5.9613
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi03g00740.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.61.4e-15406453355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      ++h ++ErrRR+++N++f  Lr+++P       ++++Ka+iL  ++eYIk+L+
  Vradi03g00740.1 406 TSHVMAERRRREKLNERFLILRSMVPFV-----TRMDKASILGDTIEYIKQLR 453
                      79*************************8.....7*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.7E-539186IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.485403452IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-18404466IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-18406467IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.6E-13406452IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.22E-16406457No hitNo description
SMARTSM003537.7E-18409458IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2609.9E-4483538No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MAAPPNSRLQ TMLRSAVQSV QWTYSLFWQL CPQQGILTWG DGYYNGAIKT RKTVQAMEVS  60
TEEASLQRSE QLRELYESLS AGEANSQTRR PCAALSPEDL TESEWFYLLC VSFSFHPGLG  120
LPGTAYARRQ HIWLTGANEV ESKAFSRAIL AKTVVCIPVL DGVVELGTTD KMEEDLNFIQ  180
HIKSFFIDQH PPTAKPALSE HSTSNPTSSS YPLVVTATTA PPNQNDINVV HKGKQVKLNS  240
EPGLTVRNNS FIPTELMELD TLEGFRVGSP GDGSNHLDSF PTEASMALCS AGLELLQLQL  300
PPQPPEQPPS ENKAQGDTDT HYSQTVSSIL QKNSGWWPDS PSVNHLTDSF QSAFNKWNSG  360
SDEYRGQLQM TVADVTSQWL LKYILFSVPY LHANRVKGKG APSYETSHVM AERRRREKLN  420
ERFLILRSMV PFVTRMDKAS ILGDTIEYIK QLREKIESLE ARERHVGKRR MREVEVSIIE  480
SDALLELECV HREGLLLDVM TLLRELGIEV MMVQSWVRDD GIFVAEMRAK VKENGNGEMA  540
SILEVKNALN QIIPRHIPHH DPYTLPSNDH F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A5e-22818612192Transcription factor MYC3
4rqw_B5e-22818612192Transcription factor MYC3
4rs9_A5e-22818612192Transcription factor MYC3
4yz6_A5e-22818612192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1411416ERRRRE
2412417RRRREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi03g00740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014495284.10.0basic helix-loop-helix protein A
SwissprotE3SXU40.0BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLA0A1S3TNF20.0A0A1S3TNF2_VIGRR; basic helix-loop-helix protein A
STRINGGLYMA19G33770.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36373249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.11e-91bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]